Results 41 - 60 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30220 | 3' | -50 | NC_006273.1 | + | 75619 | 0.79 | 0.69413 |
Target: 5'- gCGCCAUCAUCAGCaucugccucaaacagGACUGCGaCCa -3' miRNA: 3'- gGUGGUAGUAGUCGcaa------------UUGACGC-GG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 56367 | 0.8 | 0.659365 |
Target: 5'- aCCGCCGUCGUCuccgccGGCGUUuucuccaucgcggGACcGCGCCg -3' miRNA: 3'- -GGUGGUAGUAG------UCGCAA-------------UUGaCGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 73123 | 0.8 | 0.650106 |
Target: 5'- aCCGCCGaCGUCuGCGccgcaAACUGCGCCg -3' miRNA: 3'- -GGUGGUaGUAGuCGCaa---UUGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 233195 | 0.81 | 0.588362 |
Target: 5'- cCCACCAUCAccgUCGGCGccgccGCUGCuGCCg -3' miRNA: 3'- -GGUGGUAGU---AGUCGCaau--UGACG-CGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 170855 | 0.82 | 0.567959 |
Target: 5'- aCACCGUCGuuacaagcaUCGGcCGUgcGCUGCGCCa -3' miRNA: 3'- gGUGGUAGU---------AGUC-GCAauUGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 140993 | 0.74 | 0.912318 |
Target: 5'- gCC-CCAUCGUCAuCcaaGACUGCGCCg -3' miRNA: 3'- -GGuGGUAGUAGUcGcaaUUGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 149665 | 0.74 | 0.918178 |
Target: 5'- aCGCCGcCcgCGGCGUUAgguggcuguuGCUGCGCg -3' miRNA: 3'- gGUGGUaGuaGUCGCAAU----------UGACGCGg -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 162893 | 0.71 | 0.972766 |
Target: 5'- aCCACCAUCAUCAccaccauaacGcCGUgacgGACgugGcCGCCg -3' miRNA: 3'- -GGUGGUAGUAGU----------C-GCAa---UUGa--C-GCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 64977 | 0.71 | 0.972766 |
Target: 5'- gUCACCGUCAaCu-CGUUGGCgcGCGCCg -3' miRNA: 3'- -GGUGGUAGUaGucGCAAUUGa-CGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 143859 | 0.71 | 0.972766 |
Target: 5'- gCCGCCAUCAUCAuGUGgg----GCGUCu -3' miRNA: 3'- -GGUGGUAGUAGU-CGCaauugaCGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 21929 | 0.72 | 0.969915 |
Target: 5'- gCCGCCggCAUCGG-GUaGACgGCGCUa -3' miRNA: 3'- -GGUGGuaGUAGUCgCAaUUGaCGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 136697 | 0.72 | 0.966857 |
Target: 5'- aCGCgGUCAUgAGUugGUgcaGCUGCGCCu -3' miRNA: 3'- gGUGgUAGUAgUCG--CAau-UGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 131042 | 0.72 | 0.961517 |
Target: 5'- gCCGCCAUUugacuuuacggggCAGC---AGCUGCGCCg -3' miRNA: 3'- -GGUGGUAGua-----------GUCGcaaUUGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 166931 | 0.73 | 0.952436 |
Target: 5'- gCGgCAUCGUCuGCGUgaugAGCUGCugGCCc -3' miRNA: 3'- gGUgGUAGUAGuCGCAa---UUGACG--CGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 153847 | 0.73 | 0.952436 |
Target: 5'- aUCAUCGUCAUCGacgaguGCGgccuuauGCUGCGCUa -3' miRNA: 3'- -GGUGGUAGUAGU------CGCaau----UGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 117698 | 0.73 | 0.94826 |
Target: 5'- cCCAUUAUCccgggugggGUCGGCGUUAcgaGCccGCGCCg -3' miRNA: 3'- -GGUGGUAG---------UAGUCGCAAU---UGa-CGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 1715 | 0.73 | 0.934305 |
Target: 5'- uCCGCCG-CggCGGUGgcGACUGgGCCg -3' miRNA: 3'- -GGUGGUaGuaGUCGCaaUUGACgCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 65786 | 0.74 | 0.929172 |
Target: 5'- -uGCCGUCaAUCAGCGcucgUGuCUGCGUCg -3' miRNA: 3'- ggUGGUAG-UAGUCGCa---AUuGACGCGG- -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 124984 | 0.74 | 0.923796 |
Target: 5'- gCAUCAaCGUCAGCGUcauAUUGCGCa -3' miRNA: 3'- gGUGGUaGUAGUCGCAau-UGACGCGg -5' |
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30220 | 3' | -50 | NC_006273.1 | + | 78419 | 0.74 | 0.918178 |
Target: 5'- cCCGCCGcCGUCAGCGUcguCguccGUGCCa -3' miRNA: 3'- -GGUGGUaGUAGUCGCAauuGa---CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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