miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 1715 0.73 0.934305
Target:  5'- uCCGCCG-CggCGGUGgcGACUGgGCCg -3'
miRNA:   3'- -GGUGGUaGuaGUCGCaaUUGACgCGG- -5'
30220 3' -50 NC_006273.1 + 117698 0.73 0.94826
Target:  5'- cCCAUUAUCccgggugggGUCGGCGUUAcgaGCccGCGCCg -3'
miRNA:   3'- -GGUGGUAG---------UAGUCGCAAU---UGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 52817 0.71 0.977874
Target:  5'- cUCACCGUCAauuacgccaugUUGGCGgcgUAACcgGUGCCg -3'
miRNA:   3'- -GGUGGUAGU-----------AGUCGCa--AUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 103732 0.71 0.977874
Target:  5'- gCGCCG-CGUCAGCGUcguaAGCcaccacGCGCCg -3'
miRNA:   3'- gGUGGUaGUAGUCGCAa---UUGa-----CGCGG- -5'
30220 3' -50 NC_006273.1 + 122045 0.71 0.980145
Target:  5'- aCACCAggAUCAGCGagGGCUG-GCUc -3'
miRNA:   3'- gGUGGUagUAGUCGCaaUUGACgCGG- -5'
30220 3' -50 NC_006273.1 + 77152 0.71 0.980145
Target:  5'- aCCGCCGUCGcCGGCc--GACgcGCGCCc -3'
miRNA:   3'- -GGUGGUAGUaGUCGcaaUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 152439 0.71 0.980145
Target:  5'- gCCGCCA-CGUacaAGCGgaugUGcuugccgcgcaGCUGCGCCu -3'
miRNA:   3'- -GGUGGUaGUAg--UCGCa---AU-----------UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 227106 0.71 0.982238
Target:  5'- aCCGCCcacggCGGCGUggguaUGCGCCg -3'
miRNA:   3'- -GGUGGuaguaGUCGCAauug-ACGCGG- -5'
30220 3' -50 NC_006273.1 + 46796 0.7 0.98416
Target:  5'- aCCGgCGUuaagcccgaggaCAUCAGCGUgcACcuggGCGCCg -3'
miRNA:   3'- -GGUgGUA------------GUAGUCGCAauUGa---CGCGG- -5'
30220 3' -50 NC_006273.1 + 188027 0.7 0.98416
Target:  5'- -uGCUAUCGUCgccgguuucgGGCGaUGACaGCGCCg -3'
miRNA:   3'- ggUGGUAGUAG----------UCGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 131256 0.71 0.972766
Target:  5'- aUCGCCgcGUCGggucUCGGCGUgcGC-GCGCCg -3'
miRNA:   3'- -GGUGG--UAGU----AGUCGCAauUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 64520 0.71 0.972766
Target:  5'- cCCGCCGgcucgaCAUCGGUGUcc-CUGcCGCCg -3'
miRNA:   3'- -GGUGGUa-----GUAGUCGCAauuGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 153847 0.73 0.952436
Target:  5'- aUCAUCGUCAUCGacgaguGCGgccuuauGCUGCGCUa -3'
miRNA:   3'- -GGUGGUAGUAGU------CGCaau----UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 166931 0.73 0.952436
Target:  5'- gCGgCAUCGUCuGCGUgaugAGCUGCugGCCc -3'
miRNA:   3'- gGUgGUAGUAGuCGCAa---UUGACG--CGG- -5'
30220 3' -50 NC_006273.1 + 131042 0.72 0.961517
Target:  5'- gCCGCCAUUugacuuuacggggCAGC---AGCUGCGCCg -3'
miRNA:   3'- -GGUGGUAGua-----------GUCGcaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 136697 0.72 0.966857
Target:  5'- aCGCgGUCAUgAGUugGUgcaGCUGCGCCu -3'
miRNA:   3'- gGUGgUAGUAgUCG--CAau-UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 21929 0.72 0.969915
Target:  5'- gCCGCCggCAUCGG-GUaGACgGCGCUa -3'
miRNA:   3'- -GGUGGuaGUAGUCgCAaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 143859 0.71 0.972766
Target:  5'- gCCGCCAUCAUCAuGUGgg----GCGUCu -3'
miRNA:   3'- -GGUGGUAGUAGU-CGCaauugaCGCGG- -5'
30220 3' -50 NC_006273.1 + 64977 0.71 0.972766
Target:  5'- gUCACCGUCAaCu-CGUUGGCgcGCGCCg -3'
miRNA:   3'- -GGUGGUAGUaGucGCAAUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 162893 0.71 0.972766
Target:  5'- aCCACCAUCAUCAccaccauaacGcCGUgacgGACgugGcCGCCg -3'
miRNA:   3'- -GGUGGUAGUAGU----------C-GCAa---UUGa--C-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.