miRNA display CGI


Results 81 - 100 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 126852 0.7 0.987527
Target:  5'- gCCugCAg---CAGCGgcgUAugUGCGUCg -3'
miRNA:   3'- -GGugGUaguaGUCGCa--AUugACGCGG- -5'
30220 3' -50 NC_006273.1 + 127506 0.7 0.987527
Target:  5'- aUCAaCGUCAcCAGCGcgUAGCUGUGCg -3'
miRNA:   3'- -GGUgGUAGUaGUCGCa-AUUGACGCGg -5'
30220 3' -50 NC_006273.1 + 70694 0.69 0.991508
Target:  5'- aCACCGUUGUacGCGU--GCUGCGaCCg -3'
miRNA:   3'- gGUGGUAGUAguCGCAauUGACGC-GG- -5'
30220 3' -50 NC_006273.1 + 41489 0.69 0.991953
Target:  5'- -gGCCGUggaaggauugacaggCGUCGGCGUgaggaUGGCaGCGCCg -3'
miRNA:   3'- ggUGGUA---------------GUAGUCGCA-----AUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 189888 0.69 0.992584
Target:  5'- aCCGCCGggCAUCGcCGUcGGCUGCGaCg -3'
miRNA:   3'- -GGUGGUa-GUAGUcGCAaUUGACGCgG- -5'
30220 3' -50 NC_006273.1 + 233641 0.69 0.993457
Target:  5'- gCCACCGUCGUgccggcccaccgcCGGCGc-AGCUcccguccgaGCGCCg -3'
miRNA:   3'- -GGUGGUAGUA-------------GUCGCaaUUGA---------CGCGG- -5'
30220 3' -50 NC_006273.1 + 75926 0.69 0.993549
Target:  5'- gCCAUgGUCAUgGGCGaaGACacgGUGCCu -3'
miRNA:   3'- -GGUGgUAGUAgUCGCaaUUGa--CGCGG- -5'
30220 3' -50 NC_006273.1 + 188027 0.7 0.98416
Target:  5'- -uGCUAUCGUCgccgguuucgGGCGaUGACaGCGCCg -3'
miRNA:   3'- ggUGGUAGUAG----------UCGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 46796 0.7 0.98416
Target:  5'- aCCGgCGUuaagcccgaggaCAUCAGCGUgcACcuggGCGCCg -3'
miRNA:   3'- -GGUgGUA------------GUAGUCGCAauUGa---CGCGG- -5'
30220 3' -50 NC_006273.1 + 227106 0.71 0.982238
Target:  5'- aCCGCCcacggCGGCGUggguaUGCGCCg -3'
miRNA:   3'- -GGUGGuaguaGUCGCAauug-ACGCGG- -5'
30220 3' -50 NC_006273.1 + 64977 0.71 0.972766
Target:  5'- gUCACCGUCAaCu-CGUUGGCgcGCGCCg -3'
miRNA:   3'- -GGUGGUAGUaGucGCAAUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 162893 0.71 0.972766
Target:  5'- aCCACCAUCAUCAccaccauaacGcCGUgacgGACgugGcCGCCg -3'
miRNA:   3'- -GGUGGUAGUAGU----------C-GCAa---UUGa--C-GCGG- -5'
30220 3' -50 NC_006273.1 + 64520 0.71 0.972766
Target:  5'- cCCGCCGgcucgaCAUCGGUGUcc-CUGcCGCCg -3'
miRNA:   3'- -GGUGGUa-----GUAGUCGCAauuGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 131256 0.71 0.972766
Target:  5'- aUCGCCgcGUCGggucUCGGCGUgcGC-GCGCCg -3'
miRNA:   3'- -GGUGG--UAGU----AGUCGCAauUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 52817 0.71 0.977874
Target:  5'- cUCACCGUCAauuacgccaugUUGGCGgcgUAACcgGUGCCg -3'
miRNA:   3'- -GGUGGUAGU-----------AGUCGCa--AUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 103732 0.71 0.977874
Target:  5'- gCGCCG-CGUCAGCGUcguaAGCcaccacGCGCCg -3'
miRNA:   3'- gGUGGUaGUAGUCGCAa---UUGa-----CGCGG- -5'
30220 3' -50 NC_006273.1 + 122045 0.71 0.980145
Target:  5'- aCACCAggAUCAGCGagGGCUG-GCUc -3'
miRNA:   3'- gGUGGUagUAGUCGCaaUUGACgCGG- -5'
30220 3' -50 NC_006273.1 + 77152 0.71 0.980145
Target:  5'- aCCGCCGUCGcCGGCc--GACgcGCGCCc -3'
miRNA:   3'- -GGUGGUAGUaGUCGcaaUUGa-CGCGG- -5'
30220 3' -50 NC_006273.1 + 152439 0.71 0.980145
Target:  5'- gCCGCCA-CGUacaAGCGgaugUGcuugccgcgcaGCUGCGCCu -3'
miRNA:   3'- -GGUGGUaGUAg--UCGCa---AU-----------UGACGCGG- -5'
30220 3' -50 NC_006273.1 + 1802 0.69 0.993549
Target:  5'- gCCGCCAaccugUCGUCAccuuacUGUUGGC-GCGCCa -3'
miRNA:   3'- -GGUGGU-----AGUAGUc-----GCAAUUGaCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.