miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 38302 0.81 0.588362
Target:  5'- cCCACCAUCAccgUCGGCGccgccGCUGCuGCCg -3'
miRNA:   3'- -GGUGGUAGU---AGUCGCaau--UGACG-CGG- -5'
30220 3' -50 NC_006273.1 + 49667 0.72 0.95638
Target:  5'- -aGCCGUCGaCAGCGUggacGACUGgGCg -3'
miRNA:   3'- ggUGGUAGUaGUCGCAa---UUGACgCGg -5'
30220 3' -50 NC_006273.1 + 122517 0.72 0.966857
Target:  5'- aCACCGUCAcguuuUCcaaAGCGUUGACcaCGCCg -3'
miRNA:   3'- gGUGGUAGU-----AG---UCGCAAUUGacGCGG- -5'
30220 3' -50 NC_006273.1 + 199617 0.66 0.999703
Target:  5'- uCgGCC-UCGUCAGUGUguACgaaugcGUGCCg -3'
miRNA:   3'- -GgUGGuAGUAGUCGCAauUGa-----CGCGG- -5'
30220 3' -50 NC_006273.1 + 47678 0.77 0.81565
Target:  5'- aC-CCAUCAUCGGCGUgauGCUcGUGCUg -3'
miRNA:   3'- gGuGGUAGUAGUCGCAau-UGA-CGCGG- -5'
30220 3' -50 NC_006273.1 + 161615 0.77 0.824299
Target:  5'- cCCACCAUgGUCGcCGcUGGCgGCGCCg -3'
miRNA:   3'- -GGUGGUAgUAGUcGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 27663 0.76 0.864734
Target:  5'- aCCGuguuCCAUCAUCAGCGUauucuACUcuacggcuacgGCGCCa -3'
miRNA:   3'- -GGU----GGUAGUAGUCGCAau---UGA-----------CGCGG- -5'
30220 3' -50 NC_006273.1 + 86524 0.75 0.872209
Target:  5'- gUCGCCGUCGUCAcGCGgcAGCgGCGgCa -3'
miRNA:   3'- -GGUGGUAGUAGU-CGCaaUUGaCGCgG- -5'
30220 3' -50 NC_006273.1 + 94712 0.74 0.923796
Target:  5'- cCCGCCGUCGUCgccugcGGCGUUGGC-GCagggaauucguaGCCg -3'
miRNA:   3'- -GGUGGUAGUAG------UCGCAAUUGaCG------------CGG- -5'
30220 3' -50 NC_006273.1 + 197737 0.73 0.943847
Target:  5'- gCGCCGUCAaCAGCGUgccuuuuGCcGCGCg -3'
miRNA:   3'- gGUGGUAGUaGUCGCAau-----UGaCGCGg -5'
30220 3' -50 NC_006273.1 + 42168 0.73 0.939197
Target:  5'- gCCGCCGcCGcCAGCGgUAGCUGCuCCg -3'
miRNA:   3'- -GGUGGUaGUaGUCGCaAUUGACGcGG- -5'
30220 3' -50 NC_006273.1 + 99471 0.74 0.906218
Target:  5'- -uGCuCAUCGUCAGCG--AACcGCGCCu -3'
miRNA:   3'- ggUG-GUAGUAGUCGCaaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 31457 0.8 0.660393
Target:  5'- gCCGCCAUgA--GGCGgUGGCUGCGCCu -3'
miRNA:   3'- -GGUGGUAgUagUCGCaAUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 95505 0.73 0.943847
Target:  5'- -gACCGagaaAUCGGCGgccggaGACUGCGCCg -3'
miRNA:   3'- ggUGGUag--UAGUCGCaa----UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 194953 0.78 0.740128
Target:  5'- cCCACCGUCGUCuacggccaaaagcAGCGUaucgaaUGCGCCg -3'
miRNA:   3'- -GGUGGUAGUAG-------------UCGCAauug--ACGCGG- -5'
30220 3' -50 NC_006273.1 + 96995 0.75 0.879466
Target:  5'- -gGCCGUCuccCAGUGUgacCUGCGCCg -3'
miRNA:   3'- ggUGGUAGua-GUCGCAauuGACGCGG- -5'
30220 3' -50 NC_006273.1 + 226536 0.73 0.943847
Target:  5'- aCCACCAgcagacUAUCAGCGUggccacgAACgagcccGCGCCc -3'
miRNA:   3'- -GGUGGUa-----GUAGUCGCAa------UUGa-----CGCGG- -5'
30220 3' -50 NC_006273.1 + 171160 0.72 0.960094
Target:  5'- -gGCCAggUCAUCGGCGcUAGC-GCGCg -3'
miRNA:   3'- ggUGGU--AGUAGUCGCaAUUGaCGCGg -5'
30220 3' -50 NC_006273.1 + 21461 0.78 0.760509
Target:  5'- gCCACCGUCGcccUCAGCGUgcucAGCUGguggcucaugcCGCCa -3'
miRNA:   3'- -GGUGGUAGU---AGUCGCAa---UUGAC-----------GCGG- -5'
30220 3' -50 NC_006273.1 + 63477 0.76 0.832771
Target:  5'- cCCACUcUUG-CAGCGUUAGCaGCGCCc -3'
miRNA:   3'- -GGUGGuAGUaGUCGCAAUUGaCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.