miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 215141 0.72 0.969915
Target:  5'- -gACCGUCAg-AGCGUUAua-GCGCCg -3'
miRNA:   3'- ggUGGUAGUagUCGCAAUugaCGCGG- -5'
30220 3' -50 NC_006273.1 + 122517 0.72 0.966857
Target:  5'- aCACCGUCAcguuuUCcaaAGCGUUGACcaCGCCg -3'
miRNA:   3'- gGUGGUAGU-----AG---UCGCAAUUGacGCGG- -5'
30220 3' -50 NC_006273.1 + 99471 0.74 0.906218
Target:  5'- -uGCuCAUCGUCAGCG--AACcGCGCCu -3'
miRNA:   3'- ggUG-GUAGUAGUCGCaaUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 21461 0.78 0.760509
Target:  5'- gCCACCGUCGcccUCAGCGUgcucAGCUGguggcucaugcCGCCa -3'
miRNA:   3'- -GGUGGUAGU---AGUCGCAa---UUGAC-----------GCGG- -5'
30220 3' -50 NC_006273.1 + 85146 0.7 0.990312
Target:  5'- gCCACCcgCuuagCAGCGUg--UUGCGCg -3'
miRNA:   3'- -GGUGGuaGua--GUCGCAauuGACGCGg -5'
30220 3' -50 NC_006273.1 + 48037 0.71 0.980145
Target:  5'- uCCGCCGgaCAU-GGCGgUGACgGCGCCg -3'
miRNA:   3'- -GGUGGUa-GUAgUCGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 49667 0.72 0.95638
Target:  5'- -aGCCGUCGaCAGCGUggacGACUGgGCg -3'
miRNA:   3'- ggUGGUAGUaGUCGCAa---UUGACgCGg -5'
30220 3' -50 NC_006273.1 + 194953 0.78 0.740128
Target:  5'- cCCACCGUCGUCuacggccaaaagcAGCGUaucgaaUGCGCCg -3'
miRNA:   3'- -GGUGGUAGUAG-------------UCGCAauug--ACGCGG- -5'
30220 3' -50 NC_006273.1 + 26330 0.71 0.979706
Target:  5'- aCCGCgAUCGUCAuGCGUgucuacggauuGCUGaCGCUg -3'
miRNA:   3'- -GGUGgUAGUAGU-CGCAau---------UGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 31457 0.8 0.660393
Target:  5'- gCCGCCAUgA--GGCGgUGGCUGCGCCu -3'
miRNA:   3'- -GGUGGUAgUagUCGCaAUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 171160 0.72 0.960094
Target:  5'- -gGCCAggUCAUCGGCGcUAGC-GCGCg -3'
miRNA:   3'- ggUGGU--AGUAGUCGCaAUUGaCGCGg -5'
30220 3' -50 NC_006273.1 + 38632 0.71 0.975417
Target:  5'- aCgGCCGUCAgCAGCGacgcgggguGCgGCGCCg -3'
miRNA:   3'- -GgUGGUAGUaGUCGCaau------UGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 95505 0.73 0.943847
Target:  5'- -gACCGagaaAUCGGCGgccggaGACUGCGCCg -3'
miRNA:   3'- ggUGGUag--UAGUCGCaa----UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 94712 0.74 0.923796
Target:  5'- cCCGCCGUCGUCgccugcGGCGUUGGC-GCagggaauucguaGCCg -3'
miRNA:   3'- -GGUGGUAGUAG------UCGCAAUUGaCG------------CGG- -5'
30220 3' -50 NC_006273.1 + 27663 0.76 0.864734
Target:  5'- aCCGuguuCCAUCAUCAGCGUauucuACUcuacggcuacgGCGCCa -3'
miRNA:   3'- -GGU----GGUAGUAGUCGCAau---UGA-----------CGCGG- -5'
30220 3' -50 NC_006273.1 + 47678 0.77 0.81565
Target:  5'- aC-CCAUCAUCGGCGUgauGCUcGUGCUg -3'
miRNA:   3'- gGuGGUAGUAGUCGCAau-UGA-CGCGG- -5'
30220 3' -50 NC_006273.1 + 108771 0.69 0.991508
Target:  5'- cCCACCAUCugcCGGCGUUGA--GCGaCg -3'
miRNA:   3'- -GGUGGUAGua-GUCGCAAUUgaCGCgG- -5'
30220 3' -50 NC_006273.1 + 198643 0.7 0.990312
Target:  5'- cCCgACCAUCG--GGCcg-AGCUGUGCCg -3'
miRNA:   3'- -GG-UGGUAGUagUCGcaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 1707 0.7 0.987527
Target:  5'- gCGCCGagGaggcgacggcgcUCGGaCGggAGCUGCGCCg -3'
miRNA:   3'- gGUGGUagU------------AGUC-GCaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 161947 0.71 0.980145
Target:  5'- gCACCGUCAUCguGGUGgcgAGC-GCGCUc -3'
miRNA:   3'- gGUGGUAGUAG--UCGCaa-UUGaCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.