miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 233635 0.7 0.988988
Target:  5'- gCACCAgcaGUCGGCGUcGAagucgcUUGCGCUg -3'
miRNA:   3'- gGUGGUag-UAGUCGCAaUU------GACGCGG- -5'
30220 3' -50 NC_006273.1 + 49667 0.72 0.95638
Target:  5'- -aGCCGUCGaCAGCGUggacGACUGgGCg -3'
miRNA:   3'- ggUGGUAGUaGUCGCAa---UUGACgCGg -5'
30220 3' -50 NC_006273.1 + 194953 0.78 0.740128
Target:  5'- cCCACCGUCGUCuacggccaaaagcAGCGUaucgaaUGCGCCg -3'
miRNA:   3'- -GGUGGUAGUAG-------------UCGCAauug--ACGCGG- -5'
30220 3' -50 NC_006273.1 + 153184 0.7 0.987527
Target:  5'- aCCACCGUCGUCugaugcauccacGGCG---GCUcCGCCu -3'
miRNA:   3'- -GGUGGUAGUAG------------UCGCaauUGAcGCGG- -5'
30220 3' -50 NC_006273.1 + 31457 0.8 0.660393
Target:  5'- gCCGCCAUgA--GGCGgUGGCUGCGCCu -3'
miRNA:   3'- -GGUGGUAgUagUCGCaAUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 89587 0.68 0.996453
Target:  5'- -gGCCGUCGUgGGUGgccucgcggUGGCUGcCGCUa -3'
miRNA:   3'- ggUGGUAGUAgUCGCa--------AUUGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 47678 0.77 0.81565
Target:  5'- aC-CCAUCAUCGGCGUgauGCUcGUGCUg -3'
miRNA:   3'- gGuGGUAGUAGUCGCAau-UGA-CGCGG- -5'
30220 3' -50 NC_006273.1 + 43373 0.68 0.996397
Target:  5'- uCCACCAUC-UCcugauGGCGUUGucgggccaccaggGCUGCuCCu -3'
miRNA:   3'- -GGUGGUAGuAG-----UCGCAAU-------------UGACGcGG- -5'
30220 3' -50 NC_006273.1 + 100921 0.69 0.995104
Target:  5'- cCCACCuUCAUCAGCcucAACucgcaggUGCGCa -3'
miRNA:   3'- -GGUGGuAGUAGUCGcaaUUG-------ACGCGg -5'
30220 3' -50 NC_006273.1 + 119341 0.69 0.993549
Target:  5'- -gGCC-UCAUCuguaccGCG--AACUGCGCCa -3'
miRNA:   3'- ggUGGuAGUAGu-----CGCaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 38749 0.69 0.993457
Target:  5'- gCCACCGUCGUgccggcccaccgcCGGCGc-AGCUcccguccgaGCGCCg -3'
miRNA:   3'- -GGUGGUAGUA-------------GUCGCaaUUGA---------CGCGG- -5'
30220 3' -50 NC_006273.1 + 108771 0.69 0.991508
Target:  5'- cCCACCAUCugcCGGCGUUGA--GCGaCg -3'
miRNA:   3'- -GGUGGUAGua-GUCGCAAUUgaCGCgG- -5'
30220 3' -50 NC_006273.1 + 198643 0.7 0.990312
Target:  5'- cCCgACCAUCG--GGCcg-AGCUGUGCCg -3'
miRNA:   3'- -GG-UGGUAGUagUCGcaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 163060 0.71 0.980145
Target:  5'- cCCACCAagaUCGuccucuuugcacUCAGCGccgcGCUGCGCg -3'
miRNA:   3'- -GGUGGU---AGU------------AGUCGCaau-UGACGCGg -5'
30220 3' -50 NC_006273.1 + 26330 0.71 0.979706
Target:  5'- aCCGCgAUCGUCAuGCGUgucuacggauuGCUGaCGCUg -3'
miRNA:   3'- -GGUGgUAGUAGU-CGCAau---------UGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 215141 0.72 0.969915
Target:  5'- -gACCGUCAg-AGCGUUAua-GCGCCg -3'
miRNA:   3'- ggUGGUAGUagUCGCAAUugaCGCGG- -5'
30220 3' -50 NC_006273.1 + 122517 0.72 0.966857
Target:  5'- aCACCGUCAcguuuUCcaaAGCGUUGACcaCGCCg -3'
miRNA:   3'- gGUGGUAGU-----AG---UCGCAAUUGacGCGG- -5'
30220 3' -50 NC_006273.1 + 95505 0.73 0.943847
Target:  5'- -gACCGagaaAUCGGCGgccggaGACUGCGCCg -3'
miRNA:   3'- ggUGGUag--UAGUCGCaa----UUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 94712 0.74 0.923796
Target:  5'- cCCGCCGUCGUCgccugcGGCGUUGGC-GCagggaauucguaGCCg -3'
miRNA:   3'- -GGUGGUAGUAG------UCGCAAUUGaCG------------CGG- -5'
30220 3' -50 NC_006273.1 + 27663 0.76 0.864734
Target:  5'- aCCGuguuCCAUCAUCAGCGUauucuACUcuacggcuacgGCGCCa -3'
miRNA:   3'- -GGU----GGUAGUAGUCGCAau---UGA-----------CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.