miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 3' -50 NC_006273.1 + 198643 0.7 0.990312
Target:  5'- cCCgACCAUCG--GGCcg-AGCUGUGCCg -3'
miRNA:   3'- -GG-UGGUAGUagUCGcaaUUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 25168 0.69 0.992584
Target:  5'- aCUACCGUCGUCcgacGCGaUGACguuaaCGCCg -3'
miRNA:   3'- -GGUGGUAGUAGu---CGCaAUUGac---GCGG- -5'
30220 3' -50 NC_006273.1 + 161615 0.77 0.824299
Target:  5'- cCCACCAUgGUCGcCGcUGGCgGCGCCg -3'
miRNA:   3'- -GGUGGUAgUAGUcGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 86524 0.75 0.872209
Target:  5'- gUCGCCGUCGUCAcGCGgcAGCgGCGgCa -3'
miRNA:   3'- -GGUGGUAGUAGU-CGCaaUUGaCGCgG- -5'
30220 3' -50 NC_006273.1 + 179609 0.73 0.934305
Target:  5'- cCCACCGcuacccguacUCAUCGGCGagGGCgucGCGUCu -3'
miRNA:   3'- -GGUGGU----------AGUAGUCGCaaUUGa--CGCGG- -5'
30220 3' -50 NC_006273.1 + 226536 0.73 0.943847
Target:  5'- aCCACCAgcagacUAUCAGCGUggccacgAACgagcccGCGCCc -3'
miRNA:   3'- -GGUGGUa-----GUAGUCGCAa------UUGa-----CGCGG- -5'
30220 3' -50 NC_006273.1 + 147781 0.72 0.966857
Target:  5'- aCCGCCG-CAaCAGCGgcGACggacgGCGUCg -3'
miRNA:   3'- -GGUGGUaGUaGUCGCaaUUGa----CGCGG- -5'
30220 3' -50 NC_006273.1 + 38632 0.71 0.975417
Target:  5'- aCgGCCGUCAgCAGCGacgcgggguGCgGCGCCg -3'
miRNA:   3'- -GgUGGUAGUaGUCGCaau------UGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 48037 0.71 0.980145
Target:  5'- uCCGCCGgaCAU-GGCGgUGACgGCGCCg -3'
miRNA:   3'- -GGUGGUa-GUAgUCGCaAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 130257 0.7 0.986581
Target:  5'- aCCGCCGguggCGUCGGUGgugcaaccgucgcAGCcGCGCCg -3'
miRNA:   3'- -GGUGGUa---GUAGUCGCaa-----------UUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 179133 0.67 0.998956
Target:  5'- gCCACCGUCccUCAGCGacgucCcGCGCg -3'
miRNA:   3'- -GGUGGUAGu-AGUCGCaauu-GaCGCGg -5'
30220 3' -50 NC_006273.1 + 152360 0.67 0.998956
Target:  5'- -gACCAUCAaccaaacCAGCGUcaagguGCUGCGUg -3'
miRNA:   3'- ggUGGUAGUa------GUCGCAau----UGACGCGg -5'
30220 3' -50 NC_006273.1 + 118172 0.69 0.993549
Target:  5'- gCCGCCggCGU-GGCGgccUGACUGCGgCu -3'
miRNA:   3'- -GGUGGuaGUAgUCGCa--AUUGACGCgG- -5'
30220 3' -50 NC_006273.1 + 68198 0.69 0.994411
Target:  5'- aCGCCggCcUCcGCGgccGCUGCGCCc -3'
miRNA:   3'- gGUGGuaGuAGuCGCaauUGACGCGG- -5'
30220 3' -50 NC_006273.1 + 43373 0.68 0.996397
Target:  5'- uCCACCAUC-UCcugauGGCGUUGucgggccaccaggGCUGCuCCu -3'
miRNA:   3'- -GGUGGUAGuAG-----UCGCAAU-------------UGACGcGG- -5'
30220 3' -50 NC_006273.1 + 89587 0.68 0.996453
Target:  5'- -gGCCGUCGUgGGUGgccucgcggUGGCUGcCGCUa -3'
miRNA:   3'- ggUGGUAGUAgUCGCa--------AUUGAC-GCGG- -5'
30220 3' -50 NC_006273.1 + 233562 0.68 0.996979
Target:  5'- -gGCCGUC----GCGUUGGC-GCGCCa -3'
miRNA:   3'- ggUGGUAGuaguCGCAAUUGaCGCGG- -5'
30220 3' -50 NC_006273.1 + 204522 0.68 0.997438
Target:  5'- aUCGCCcUCggCAGCGgacGGCUcaccugGCGCCa -3'
miRNA:   3'- -GGUGGuAGuaGUCGCaa-UUGA------CGCGG- -5'
30220 3' -50 NC_006273.1 + 38943 0.67 0.998184
Target:  5'- gCCGCUAggAUCAGCGUguuguuCGCCa -3'
miRNA:   3'- -GGUGGUagUAGUCGCAauugacGCGG- -5'
30220 3' -50 NC_006273.1 + 208214 0.67 0.998482
Target:  5'- -aGCCAUg--CAGCGU--GCgGCGCCu -3'
miRNA:   3'- ggUGGUAguaGUCGCAauUGaCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.