miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 195754 0.66 0.99874
Target:  5'- uUGAGCGCGU----CGCCGcUAaaaaagaguGACGGg -3'
miRNA:   3'- -ACUCGCGCAucauGCGGUaAU---------CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 140874 0.66 0.99874
Target:  5'- gGGGCGCGaGGUGCccGCC--UGGcCGGc -3'
miRNA:   3'- aCUCGCGCaUCAUG--CGGuaAUCuGCC- -5'
30220 5' -51.3 NC_006273.1 + 167851 0.66 0.99874
Target:  5'- aGAuGCGUGUGGa--GCCG-UAGACGa -3'
miRNA:   3'- aCU-CGCGCAUCaugCGGUaAUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 175989 0.66 0.99874
Target:  5'- ---uCGCGUG--ACGCCAgUUGGGCGGc -3'
miRNA:   3'- acucGCGCAUcaUGCGGU-AAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 176696 0.66 0.99874
Target:  5'- uUGAGCGUGcugcgcgAGUugGUgAccgAGGCGGu -3'
miRNA:   3'- -ACUCGCGCa------UCAugCGgUaa-UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 131461 0.66 0.998668
Target:  5'- -cAGCGCGUGuccgcuuucguggcGUACGCCGU--GGCGc -3'
miRNA:   3'- acUCGCGCAU--------------CAUGCGGUAauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 961 0.66 0.998487
Target:  5'- cGGGCGUGcUGGgcgccgGCGCCGgua-ACGGg -3'
miRNA:   3'- aCUCGCGC-AUCa-----UGCGGUaaucUGCC- -5'
30220 5' -51.3 NC_006273.1 + 102608 0.66 0.998487
Target:  5'- -cGGCGCGUAaaacgcugggguGUACGgCUAUgguacAGGCGGg -3'
miRNA:   3'- acUCGCGCAU------------CAUGC-GGUAa----UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 84821 0.66 0.998193
Target:  5'- cGAGCGUaagccGUggacGGUugGCCcgUGGGCcuGGg -3'
miRNA:   3'- aCUCGCG-----CA----UCAugCGGuaAUCUG--CC- -5'
30220 5' -51.3 NC_006273.1 + 78208 0.66 0.998193
Target:  5'- --uGCGCGcGGUuucgcCGCCGggaaAGACGGg -3'
miRNA:   3'- acuCGCGCaUCAu----GCGGUaa--UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 203912 0.66 0.998193
Target:  5'- aGAGCGCGcc--GCGCgAggugUAGugGGc -3'
miRNA:   3'- aCUCGCGCaucaUGCGgUa---AUCugCC- -5'
30220 5' -51.3 NC_006273.1 + 65616 0.66 0.998193
Target:  5'- --cGUGCGggGGUgACGCUAUUAGugGu -3'
miRNA:   3'- acuCGCGCa-UCA-UGCGGUAAUCugCc -5'
30220 5' -51.3 NC_006273.1 + 197211 0.66 0.998193
Target:  5'- cGGGCuCGgcGUccCGCCGUccgAGACGGu -3'
miRNA:   3'- aCUCGcGCauCAu-GCGGUAa--UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 101864 0.66 0.998193
Target:  5'- aGAGCGCGUagcugugcucGGUGCGCaggucGAUGa -3'
miRNA:   3'- aCUCGCGCA----------UCAUGCGguaauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 172208 0.66 0.997852
Target:  5'- cGAGgcCGCGccGGccGCGCCGcgAGACGGa -3'
miRNA:   3'- aCUC--GCGCa-UCa-UGCGGUaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 165407 0.66 0.997852
Target:  5'- uUGAGCuGCaUGGcGgGCCAUUGGGUGGg -3'
miRNA:   3'- -ACUCG-CGcAUCaUgCGGUAAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 203656 0.66 0.997852
Target:  5'- --uGCGCGUAGUcuucGCGCaac--GACGGc -3'
miRNA:   3'- acuCGCGCAUCA----UGCGguaauCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 102225 0.66 0.997852
Target:  5'- cGAGCGCGUcucgauaaAGUugGCUucggucGAgGGg -3'
miRNA:   3'- aCUCGCGCA--------UCAugCGGuaau--CUgCC- -5'
30220 5' -51.3 NC_006273.1 + 176289 0.66 0.997459
Target:  5'- cGuGCGCGUGagcaGCGCUAcucgcuguUUGGGCGGc -3'
miRNA:   3'- aCuCGCGCAUca--UGCGGU--------AAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 36424 0.66 0.997459
Target:  5'- uUGAGCGg--GGUAUGCguguucaGUUGGGCGGc -3'
miRNA:   3'- -ACUCGCgcaUCAUGCGg------UAAUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.