miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 38954 0.68 0.992707
Target:  5'- -cAGCGUGUuGUuCGCCAggucgUAGACGa -3'
miRNA:   3'- acUCGCGCAuCAuGCGGUa----AUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 202204 0.68 0.992707
Target:  5'- uUGAGCGUcuucauGUACGCCGUUuu-CGGc -3'
miRNA:   3'- -ACUCGCGcau---CAUGCGGUAAucuGCC- -5'
30220 5' -51.3 NC_006273.1 + 204322 0.68 0.992506
Target:  5'- gUGAGCGCGaaggccggcaugGGUAUGCauuCGUUgAGGCGGc -3'
miRNA:   3'- -ACUCGCGCa-----------UCAUGCG---GUAA-UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 234869 0.68 0.989198
Target:  5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3'
miRNA:   3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 195030 0.68 0.99209
Target:  5'- cGAGCGCGgcuuugcaaucACGCCGcucGACGGg -3'
miRNA:   3'- aCUCGCGCauca-------UGCGGUaauCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 38 0.68 0.989198
Target:  5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3'
miRNA:   3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 79915 0.68 0.989198
Target:  5'- cGAGCGUGUAcGUcuGCGCCGgc-GACa- -3'
miRNA:   3'- aCUCGCGCAU-CA--UGCGGUaauCUGcc -5'
30220 5' -51.3 NC_006273.1 + 15517 0.68 0.99365
Target:  5'- aGGGCGCGUGGgaGCGUC--UGGACc- -3'
miRNA:   3'- aCUCGCGCAUCa-UGCGGuaAUCUGcc -5'
30220 5' -51.3 NC_006273.1 + 100445 0.68 0.992506
Target:  5'- aUGGGCGCGcgucacgcgGCGCCGgugucGGCGGa -3'
miRNA:   3'- -ACUCGCGCauca-----UGCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 13300 0.68 0.992707
Target:  5'- cGAgGCGgGUAGgcUGCCGaacGACGGa -3'
miRNA:   3'- aCU-CGCgCAUCauGCGGUaauCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 233847 0.68 0.992707
Target:  5'- -cAGCGUGUuGUuCGCCAggucgUAGACGa -3'
miRNA:   3'- acUCGCGCAuCAuGCGGUa----AUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 140759 0.68 0.991656
Target:  5'- cGAGCGCGUcagcaggccgGGUcgaugACGCCGgc-GACGa -3'
miRNA:   3'- aCUCGCGCA----------UCA-----UGCGGUaauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 103779 0.68 0.991656
Target:  5'- cGcGCGCGUgccaggccgugcGGUAgGCCAggUAGACGu -3'
miRNA:   3'- aCuCGCGCA------------UCAUgCGGUa-AUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 72663 0.68 0.991433
Target:  5'- -uGGCGCGUAGUAgUGCUAggcacggcgagcUGGugGGg -3'
miRNA:   3'- acUCGCGCAUCAU-GCGGUa-----------AUCugCC- -5'
30220 5' -51.3 NC_006273.1 + 194931 0.68 0.989198
Target:  5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3'
miRNA:   3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 143661 0.68 0.989198
Target:  5'- gGAGCGUcu-GUugGCCAcgagcGACGGg -3'
miRNA:   3'- aCUCGCGcauCAugCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 88693 0.68 0.99365
Target:  5'- --uGCGCGUGGUucuGCGUCGUUAaGCGc -3'
miRNA:   3'- acuCGCGCAUCA---UGCGGUAAUcUGCc -5'
30220 5' -51.3 NC_006273.1 + 158756 0.68 0.989198
Target:  5'- cGGGuCGCGccAGUGCGCCGUc-GACGc -3'
miRNA:   3'- aCUC-GCGCa-UCAUGCGGUAauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 15197 0.69 0.987773
Target:  5'- -cGGUGcCGU-GUACGCCAUccAGAUGGa -3'
miRNA:   3'- acUCGC-GCAuCAUGCGGUAa-UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 170748 0.69 0.987773
Target:  5'- -aGGCGUGUAGgaacaugAUGCCGUUgcAGACGc -3'
miRNA:   3'- acUCGCGCAUCa------UGCGGUAA--UCUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.