Results 81 - 87 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 30220 | 5' | -51.3 | NC_006273.1 | + | 203603 | 0.73 | 0.908601 |
|
Target: 5'- aGAGCGCGUAGU-CGUaGUUuugacuGACGGc -3' miRNA: 3'- aCUCGCGCAUCAuGCGgUAAu-----CUGCC- -5' |
|||||||
| 30220 | 5' | -51.3 | NC_006273.1 | + | 199631 | 0.73 | 0.907993 |
|
Target: 5'- gGAGCGCGUcuuccccggcuuuAGUgAUGCCAUcgggcAGGCGGa -3' miRNA: 3'- aCUCGCGCA-------------UCA-UGCGGUAa----UCUGCC- -5' |
|||||||
| 30220 | 5' | -51.3 | NC_006273.1 | + | 150203 | 0.73 | 0.896006 |
|
Target: 5'- gGAGCGCGacgagugGGUGCGCUcgcuGGCGGu -3' miRNA: 3'- aCUCGCGCa------UCAUGCGGuaauCUGCC- -5' |
|||||||
| 30220 | 5' | -51.3 | NC_006273.1 | + | 196460 | 0.74 | 0.875407 |
|
Target: 5'- aGAGCuCGgcGUACGCCGccUUGGGCGu -3' miRNA: 3'- aCUCGcGCauCAUGCGGU--AAUCUGCc -5' |
|||||||
| 30220 | 5' | -51.3 | NC_006273.1 | + | 106173 | 0.74 | 0.868103 |
|
Target: 5'- cGGGCGCGUGcacGUAgGCCGcgucaaaaUAGACGGu -3' miRNA: 3'- aCUCGCGCAU---CAUgCGGUa-------AUCUGCC- -5' |
|||||||
| 30220 | 5' | -51.3 | NC_006273.1 | + | 73870 | 0.74 | 0.868103 |
|
Target: 5'- gUGAGCGCGgccgacaugcgGGcGCGCCAcagAGAUGGa -3' miRNA: 3'- -ACUCGCGCa----------UCaUGCGGUaa-UCUGCC- -5' |
|||||||
| 30220 | 5' | -51.3 | NC_006273.1 | + | 205841 | 1.11 | 0.010955 |
|
Target: 5'- gUGAGCGCGUAGUACGCCAUUAGACGGc -3' miRNA: 3'- -ACUCGCGCAUCAUGCGGUAAUCUGCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home