Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30220 | 5' | -51.3 | NC_006273.1 | + | 205841 | 1.11 | 0.010955 |
Target: 5'- gUGAGCGCGUAGUACGCCAUUAGACGGc -3' miRNA: 3'- -ACUCGCGCAUCAUGCGGUAAUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 73870 | 0.74 | 0.868103 |
Target: 5'- gUGAGCGCGgccgacaugcgGGcGCGCCAcagAGAUGGa -3' miRNA: 3'- -ACUCGCGCa----------UCaUGCGGUaa-UCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 106173 | 0.74 | 0.868103 |
Target: 5'- cGGGCGCGUGcacGUAgGCCGcgucaaaaUAGACGGu -3' miRNA: 3'- aCUCGCGCAU---CAUgCGGUa-------AUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 196460 | 0.74 | 0.875407 |
Target: 5'- aGAGCuCGgcGUACGCCGccUUGGGCGu -3' miRNA: 3'- aCUCGcGCauCAUGCGGU--AAUCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 150203 | 0.73 | 0.896006 |
Target: 5'- gGAGCGCGacgagugGGUGCGCUcgcuGGCGGu -3' miRNA: 3'- aCUCGCGCa------UCAUGCGGuaauCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 199631 | 0.73 | 0.907993 |
Target: 5'- gGAGCGCGUcuuccccggcuuuAGUgAUGCCAUcgggcAGGCGGa -3' miRNA: 3'- aCUCGCGCA-------------UCA-UGCGGUAa----UCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 203603 | 0.73 | 0.908601 |
Target: 5'- aGAGCGCGUAGU-CGUaGUUuugacuGACGGc -3' miRNA: 3'- aCUCGCGCAUCAuGCGgUAAu-----CUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 224226 | 0.72 | 0.925735 |
Target: 5'- -cAGUGCaUGGUAcCGCUAUUGGAUGGa -3' miRNA: 3'- acUCGCGcAUCAU-GCGGUAAUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 39186 | 0.71 | 0.961073 |
Target: 5'- cGAGCgGCGUugcggGGUuggaggagacgGCGCCcuUUGGACGGg -3' miRNA: 3'- aCUCG-CGCA-----UCA-----------UGCGGu-AAUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 186053 | 0.71 | 0.949557 |
Target: 5'- cGGGUGCacgGUGGUAgUGCCGUUAGucugaGCGGg -3' miRNA: 3'- aCUCGCG---CAUCAU-GCGGUAAUC-----UGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 117126 | 0.71 | 0.961073 |
Target: 5'- gGAGCGCGagucGUACGUCA--AGGCGa -3' miRNA: 3'- aCUCGCGCau--CAUGCGGUaaUCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 197183 | 0.71 | 0.949557 |
Target: 5'- cUGGGCGcCGUguucgGGUACuGCCcgcUGGACGGg -3' miRNA: 3'- -ACUCGC-GCA-----UCAUG-CGGua-AUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 117767 | 0.71 | 0.961073 |
Target: 5'- gGGGCGcCGUAGgACGCgGgauaAGACGGc -3' miRNA: 3'- aCUCGC-GCAUCaUGCGgUaa--UCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 156500 | 0.71 | 0.953621 |
Target: 5'- aGGGCGUGgaucUGGUGCGCa---AGACGGc -3' miRNA: 3'- aCUCGCGC----AUCAUGCGguaaUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 2290 | 0.71 | 0.949557 |
Target: 5'- cUGGGCGcCGUguucgGGUACuGCCcgcUGGACGGg -3' miRNA: 3'- -ACUCGC-GCA-----UCAUG-CGGua-AUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 216497 | 0.7 | 0.975982 |
Target: 5'- cGAGCGUGUgauggugcccAGUGCGCCGUgccaGCGc -3' miRNA: 3'- aCUCGCGCA----------UCAUGCGGUAauc-UGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 172175 | 0.7 | 0.967653 |
Target: 5'- gGAGCGUGUG--ACGCCGUcaaGCGGa -3' miRNA: 3'- aCUCGCGCAUcaUGCGGUAaucUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 141746 | 0.7 | 0.975982 |
Target: 5'- aGGGCGCGccg-GCGCCAgUGGAUGc -3' miRNA: 3'- aCUCGCGCaucaUGCGGUaAUCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 177509 | 0.7 | 0.970628 |
Target: 5'- cGGGCGUGUG--GCGCCAgcgaaccGGCGGc -3' miRNA: 3'- aCUCGCGCAUcaUGCGGUaau----CUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 63757 | 0.69 | 0.984493 |
Target: 5'- -uGGCGCGUGGccgggcGCGCCucucggaGGACGGc -3' miRNA: 3'- acUCGCGCAUCa-----UGCGGuaa----UCUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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