Results 81 - 87 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30220 | 5' | -51.3 | NC_006273.1 | + | 101864 | 0.66 | 0.998193 |
Target: 5'- aGAGCGCGUagcugugcucGGUGCGCaggucGAUGa -3' miRNA: 3'- aCUCGCGCA----------UCAUGCGguaauCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 102225 | 0.66 | 0.997852 |
Target: 5'- cGAGCGCGUcucgauaaAGUugGCUucggucGAgGGg -3' miRNA: 3'- aCUCGCGCA--------UCAugCGGuaau--CUgCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 29476 | 0.66 | 0.997459 |
Target: 5'- aGGGCGCGUucu-CGCCcUUGaggcuGACGGu -3' miRNA: 3'- aCUCGCGCAucauGCGGuAAU-----CUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 64749 | 0.66 | 0.997417 |
Target: 5'- aGAGCGCG-AGUugcaaaagaagcuGCccGCCGgcGGGCGGc -3' miRNA: 3'- aCUCGCGCaUCA-------------UG--CGGUaaUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 167851 | 0.66 | 0.99874 |
Target: 5'- aGAuGCGUGUGGa--GCCG-UAGACGa -3' miRNA: 3'- aCU-CGCGCAUCaugCGGUaAUCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 36424 | 0.66 | 0.997459 |
Target: 5'- uUGAGCGg--GGUAUGCguguucaGUUGGGCGGc -3' miRNA: 3'- -ACUCGCgcaUCAUGCGg------UAAUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 175989 | 0.66 | 0.99874 |
Target: 5'- ---uCGCGUG--ACGCCAgUUGGGCGGc -3' miRNA: 3'- acucGCGCAUcaUGCGGU-AAUCUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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