miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 205841 1.11 0.010955
Target:  5'- gUGAGCGCGUAGUACGCCAUUAGACGGc -3'
miRNA:   3'- -ACUCGCGCAUCAUGCGGUAAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 73870 0.74 0.868103
Target:  5'- gUGAGCGCGgccgacaugcgGGcGCGCCAcagAGAUGGa -3'
miRNA:   3'- -ACUCGCGCa----------UCaUGCGGUaa-UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 106173 0.74 0.868103
Target:  5'- cGGGCGCGUGcacGUAgGCCGcgucaaaaUAGACGGu -3'
miRNA:   3'- aCUCGCGCAU---CAUgCGGUa-------AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 196460 0.74 0.875407
Target:  5'- aGAGCuCGgcGUACGCCGccUUGGGCGu -3'
miRNA:   3'- aCUCGcGCauCAUGCGGU--AAUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 150203 0.73 0.896006
Target:  5'- gGAGCGCGacgagugGGUGCGCUcgcuGGCGGu -3'
miRNA:   3'- aCUCGCGCa------UCAUGCGGuaauCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 199631 0.73 0.907993
Target:  5'- gGAGCGCGUcuuccccggcuuuAGUgAUGCCAUcgggcAGGCGGa -3'
miRNA:   3'- aCUCGCGCA-------------UCA-UGCGGUAa----UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 203603 0.73 0.908601
Target:  5'- aGAGCGCGUAGU-CGUaGUUuugacuGACGGc -3'
miRNA:   3'- aCUCGCGCAUCAuGCGgUAAu-----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 224226 0.72 0.925735
Target:  5'- -cAGUGCaUGGUAcCGCUAUUGGAUGGa -3'
miRNA:   3'- acUCGCGcAUCAU-GCGGUAAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 2290 0.71 0.949557
Target:  5'- cUGGGCGcCGUguucgGGUACuGCCcgcUGGACGGg -3'
miRNA:   3'- -ACUCGC-GCA-----UCAUG-CGGua-AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 197183 0.71 0.949557
Target:  5'- cUGGGCGcCGUguucgGGUACuGCCcgcUGGACGGg -3'
miRNA:   3'- -ACUCGC-GCA-----UCAUG-CGGua-AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 186053 0.71 0.949557
Target:  5'- cGGGUGCacgGUGGUAgUGCCGUUAGucugaGCGGg -3'
miRNA:   3'- aCUCGCG---CAUCAU-GCGGUAAUC-----UGCC- -5'
30220 5' -51.3 NC_006273.1 + 156500 0.71 0.953621
Target:  5'- aGGGCGUGgaucUGGUGCGCa---AGACGGc -3'
miRNA:   3'- aCUCGCGC----AUCAUGCGguaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 39186 0.71 0.961073
Target:  5'- cGAGCgGCGUugcggGGUuggaggagacgGCGCCcuUUGGACGGg -3'
miRNA:   3'- aCUCG-CGCA-----UCA-----------UGCGGu-AAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 117126 0.71 0.961073
Target:  5'- gGAGCGCGagucGUACGUCA--AGGCGa -3'
miRNA:   3'- aCUCGCGCau--CAUGCGGUaaUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 117767 0.71 0.961073
Target:  5'- gGGGCGcCGUAGgACGCgGgauaAGACGGc -3'
miRNA:   3'- aCUCGC-GCAUCaUGCGgUaa--UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 172175 0.7 0.967653
Target:  5'- gGAGCGUGUG--ACGCCGUcaaGCGGa -3'
miRNA:   3'- aCUCGCGCAUcaUGCGGUAaucUGCC- -5'
30220 5' -51.3 NC_006273.1 + 177509 0.7 0.970628
Target:  5'- cGGGCGUGUG--GCGCCAgcgaaccGGCGGc -3'
miRNA:   3'- aCUCGCGCAUcaUGCGGUaau----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 216497 0.7 0.975982
Target:  5'- cGAGCGUGUgauggugcccAGUGCGCCGUgccaGCGc -3'
miRNA:   3'- aCUCGCGCA----------UCAUGCGGUAauc-UGCc -5'
30220 5' -51.3 NC_006273.1 + 141746 0.7 0.975982
Target:  5'- aGGGCGCGccg-GCGCCAgUGGAUGc -3'
miRNA:   3'- aCUCGCGCaucaUGCGGUaAUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 67635 0.69 0.978373
Target:  5'- ---aCGCGUGGUggACGCCGUUaaGGGCGa -3'
miRNA:   3'- acucGCGCAUCA--UGCGGUAA--UCUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.