miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 29476 0.66 0.997459
Target:  5'- aGGGCGCGUucu-CGCCcUUGaggcuGACGGu -3'
miRNA:   3'- aCUCGCGCAucauGCGGuAAU-----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 58636 0.66 0.997459
Target:  5'- --cGCGCGUcaugAGUcccaaagaucugACGCCGUUcuuGACGGc -3'
miRNA:   3'- acuCGCGCA----UCA------------UGCGGUAAu--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 176289 0.66 0.997459
Target:  5'- cGuGCGCGUGagcaGCGCUAcucgcuguUUGGGCGGc -3'
miRNA:   3'- aCuCGCGCAUca--UGCGGU--------AAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 64749 0.66 0.997417
Target:  5'- aGAGCGCG-AGUugcaaaagaagcuGCccGCCGgcGGGCGGc -3'
miRNA:   3'- aCUCGCGCaUCA-------------UG--CGGUaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 210659 0.67 0.997008
Target:  5'- -uAGCGcCGggauGUGCGCCAggAGGcCGGc -3'
miRNA:   3'- acUCGC-GCau--CAUGCGGUaaUCU-GCC- -5'
30220 5' -51.3 NC_006273.1 + 23504 0.67 0.997008
Target:  5'- cGAGCGCGgc--ACGCCGUUgccacgAGcAUGGa -3'
miRNA:   3'- aCUCGCGCaucaUGCGGUAA------UC-UGCC- -5'
30220 5' -51.3 NC_006273.1 + 179219 0.67 0.996493
Target:  5'- -uAGCGCGgugacGUACGCCGcgGGGCu- -3'
miRNA:   3'- acUCGCGCau---CAUGCGGUaaUCUGcc -5'
30220 5' -51.3 NC_006273.1 + 51560 0.67 0.996493
Target:  5'- cGGGgGgGUGGUgGCGgCGgaGGACGGa -3'
miRNA:   3'- aCUCgCgCAUCA-UGCgGUaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 79869 0.67 0.996493
Target:  5'- gGAGcCGgGUGaaACGCCGUccugacUGGACGGc -3'
miRNA:   3'- aCUC-GCgCAUcaUGCGGUA------AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 132719 0.67 0.996493
Target:  5'- gUGAuGCGaGUGGUgagaGCGCCGgggAGACGa -3'
miRNA:   3'- -ACU-CGCgCAUCA----UGCGGUaa-UCUGCc -5'
30220 5' -51.3 NC_006273.1 + 61001 0.67 0.996493
Target:  5'- gUGAGCaCGUAG-AUGCCG--GGACGu -3'
miRNA:   3'- -ACUCGcGCAUCaUGCGGUaaUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 211865 0.67 0.995906
Target:  5'- aGAGCGCGUGauccAUGCUcgUGGcaACGGc -3'
miRNA:   3'- aCUCGCGCAUca--UGCGGuaAUC--UGCC- -5'
30220 5' -51.3 NC_006273.1 + 42421 0.67 0.995517
Target:  5'- cGAGCGCGcgcccaaaaagguGUGCGCCGacu-GCGGg -3'
miRNA:   3'- aCUCGCGCau-----------CAUGCGGUaaucUGCC- -5'
30220 5' -51.3 NC_006273.1 + 143130 0.67 0.995242
Target:  5'- cGAGCGCuGU-GUG-GCCGUcuuucaggAGACGGg -3'
miRNA:   3'- aCUCGCG-CAuCAUgCGGUAa-------UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 105912 0.67 0.994492
Target:  5'- cGGGUGUGUGGgugaaaccgAUGUCGggggUGGGCGGc -3'
miRNA:   3'- aCUCGCGCAUCa--------UGCGGUa---AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 161322 0.67 0.994492
Target:  5'- cGaAGUGCGUGGUGCGCaaauccaAUUcGGCGu -3'
miRNA:   3'- aC-UCGCGCAUCAUGCGg------UAAuCUGCc -5'
30220 5' -51.3 NC_006273.1 + 122768 0.67 0.994412
Target:  5'- gGAGCGCGUcccguGGgaacgugGCGCCGUUcucgucgcuuaccAGuACGGu -3'
miRNA:   3'- aCUCGCGCA-----UCa------UGCGGUAA-------------UC-UGCC- -5'
30220 5' -51.3 NC_006273.1 + 83329 0.67 0.994412
Target:  5'- cGGGUggacccgGCGUGGUgggacccggcgGCGCCGU-GGugGGa -3'
miRNA:   3'- aCUCG-------CGCAUCA-----------UGCGGUAaUCugCC- -5'
30220 5' -51.3 NC_006273.1 + 22966 0.68 0.99365
Target:  5'- cUGGGUGCaGcAGUACGCCGagaaacacGGCGGa -3'
miRNA:   3'- -ACUCGCG-CaUCAUGCGGUaau-----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 15517 0.68 0.99365
Target:  5'- aGGGCGCGUGGgaGCGUC--UGGACc- -3'
miRNA:   3'- aCUCGCGCAUCa-UGCGGuaAUCUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.