miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 38 0.68 0.989198
Target:  5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3'
miRNA:   3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 961 0.66 0.998487
Target:  5'- cGGGCGUGcUGGgcgccgGCGCCGgua-ACGGg -3'
miRNA:   3'- aCUCGCGC-AUCa-----UGCGGUaaucUGCC- -5'
30220 5' -51.3 NC_006273.1 + 2240 0.69 0.982621
Target:  5'- -uGGCGCGUGG-AUGCCGgccgAGACa- -3'
miRNA:   3'- acUCGCGCAUCaUGCGGUaa--UCUGcc -5'
30220 5' -51.3 NC_006273.1 + 2290 0.71 0.949557
Target:  5'- cUGGGCGcCGUguucgGGUACuGCCcgcUGGACGGg -3'
miRNA:   3'- -ACUCGC-GCA-----UCAUG-CGGua-AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 13300 0.68 0.992707
Target:  5'- cGAgGCGgGUAGgcUGCCGaacGACGGa -3'
miRNA:   3'- aCU-CGCgCAUCauGCGGUaauCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 15197 0.69 0.987773
Target:  5'- -cGGUGcCGU-GUACGCCAUccAGAUGGa -3'
miRNA:   3'- acUCGC-GCAuCAUGCGGUAa-UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 15517 0.68 0.99365
Target:  5'- aGGGCGCGUGGgaGCGUC--UGGACc- -3'
miRNA:   3'- aCUCGCGCAUCa-UGCGGuaAUCUGcc -5'
30220 5' -51.3 NC_006273.1 + 22966 0.68 0.99365
Target:  5'- cUGGGUGCaGcAGUACGCCGagaaacacGGCGGa -3'
miRNA:   3'- -ACUCGCG-CaUCAUGCGGUaau-----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 23504 0.67 0.997008
Target:  5'- cGAGCGCGgc--ACGCCGUUgccacgAGcAUGGa -3'
miRNA:   3'- aCUCGCGCaucaUGCGGUAA------UC-UGCC- -5'
30220 5' -51.3 NC_006273.1 + 29476 0.66 0.997459
Target:  5'- aGGGCGCGUucu-CGCCcUUGaggcuGACGGu -3'
miRNA:   3'- aCUCGCGCAucauGCGGuAAU-----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 36424 0.66 0.997459
Target:  5'- uUGAGCGg--GGUAUGCguguucaGUUGGGCGGc -3'
miRNA:   3'- -ACUCGCgcaUCAUGCGg------UAAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 38954 0.68 0.992707
Target:  5'- -cAGCGUGUuGUuCGCCAggucgUAGACGa -3'
miRNA:   3'- acUCGCGCAuCAuGCGGUa----AUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 39186 0.71 0.961073
Target:  5'- cGAGCgGCGUugcggGGUuggaggagacgGCGCCcuUUGGACGGg -3'
miRNA:   3'- aCUCG-CGCA-----UCA-----------UGCGGu-AAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 42421 0.67 0.995517
Target:  5'- cGAGCGCGcgcccaaaaagguGUGCGCCGacu-GCGGg -3'
miRNA:   3'- aCUCGCGCau-----------CAUGCGGUaaucUGCC- -5'
30220 5' -51.3 NC_006273.1 + 51560 0.67 0.996493
Target:  5'- cGGGgGgGUGGUgGCGgCGgaGGACGGa -3'
miRNA:   3'- aCUCgCgCAUCA-UGCgGUaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 58636 0.66 0.997459
Target:  5'- --cGCGCGUcaugAGUcccaaagaucugACGCCGUUcuuGACGGc -3'
miRNA:   3'- acuCGCGCA----UCA------------UGCGGUAAu--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 61001 0.67 0.996493
Target:  5'- gUGAGCaCGUAG-AUGCCG--GGACGu -3'
miRNA:   3'- -ACUCGcGCAUCaUGCGGUaaUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 63757 0.69 0.984493
Target:  5'- -uGGCGCGUGGccgggcGCGCCucucggaGGACGGc -3'
miRNA:   3'- acUCGCGCAUCa-----UGCGGuaa----UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 64749 0.66 0.997417
Target:  5'- aGAGCGCG-AGUugcaaaagaagcuGCccGCCGgcGGGCGGc -3'
miRNA:   3'- aCUCGCGCaUCA-------------UG--CGGUaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 65616 0.66 0.998193
Target:  5'- --cGUGCGggGGUgACGCUAUUAGugGu -3'
miRNA:   3'- acuCGCGCa-UCA-UGCGGUAAUCugCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.