miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 67635 0.69 0.978373
Target:  5'- ---aCGCGUGGUggACGCCGUUaaGGGCGa -3'
miRNA:   3'- acucGCGCAUCA--UGCGGUAA--UCUGCc -5'
30220 5' -51.3 NC_006273.1 + 72663 0.68 0.991433
Target:  5'- -uGGCGCGUAGUAgUGCUAggcacggcgagcUGGugGGg -3'
miRNA:   3'- acUCGCGCAUCAU-GCGGUa-----------AUCugCC- -5'
30220 5' -51.3 NC_006273.1 + 72798 0.68 0.992707
Target:  5'- cGGGCGgGUAGa--GCCGc-AGACGGc -3'
miRNA:   3'- aCUCGCgCAUCaugCGGUaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 73870 0.74 0.868103
Target:  5'- gUGAGCGCGgccgacaugcgGGcGCGCCAcagAGAUGGa -3'
miRNA:   3'- -ACUCGCGCa----------UCaUGCGGUaa-UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 78208 0.66 0.998193
Target:  5'- --uGCGCGcGGUuucgcCGCCGggaaAGACGGg -3'
miRNA:   3'- acuCGCGCaUCAu----GCGGUaa--UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 79869 0.67 0.996493
Target:  5'- gGAGcCGgGUGaaACGCCGUccugacUGGACGGc -3'
miRNA:   3'- aCUC-GCgCAUcaUGCGGUA------AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 79915 0.68 0.989198
Target:  5'- cGAGCGUGUAcGUcuGCGCCGgc-GACa- -3'
miRNA:   3'- aCUCGCGCAU-CA--UGCGGUaauCUGcc -5'
30220 5' -51.3 NC_006273.1 + 83329 0.67 0.994412
Target:  5'- cGGGUggacccgGCGUGGUgggacccggcgGCGCCGU-GGugGGa -3'
miRNA:   3'- aCUCG-------CGCAUCA-----------UGCGGUAaUCugCC- -5'
30220 5' -51.3 NC_006273.1 + 84821 0.66 0.998193
Target:  5'- cGAGCGUaagccGUggacGGUugGCCcgUGGGCcuGGg -3'
miRNA:   3'- aCUCGCG-----CA----UCAugCGGuaAUCUG--CC- -5'
30220 5' -51.3 NC_006273.1 + 88693 0.68 0.99365
Target:  5'- --uGCGCGUGGUucuGCGUCGUUAaGCGc -3'
miRNA:   3'- acuCGCGCAUCA---UGCGGUAAUcUGCc -5'
30220 5' -51.3 NC_006273.1 + 93232 0.69 0.984493
Target:  5'- aGAGCGCGgcGUACGCUGguc-ACGu -3'
miRNA:   3'- aCUCGCGCauCAUGCGGUaaucUGCc -5'
30220 5' -51.3 NC_006273.1 + 100445 0.68 0.992506
Target:  5'- aUGGGCGCGcgucacgcgGCGCCGgugucGGCGGa -3'
miRNA:   3'- -ACUCGCGCauca-----UGCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 101864 0.66 0.998193
Target:  5'- aGAGCGCGUagcugugcucGGUGCGCaggucGAUGa -3'
miRNA:   3'- aCUCGCGCA----------UCAUGCGguaauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 102225 0.66 0.997852
Target:  5'- cGAGCGCGUcucgauaaAGUugGCUucggucGAgGGg -3'
miRNA:   3'- aCUCGCGCA--------UCAugCGGuaau--CUgCC- -5'
30220 5' -51.3 NC_006273.1 + 102608 0.66 0.998487
Target:  5'- -cGGCGCGUAaaacgcugggguGUACGgCUAUgguacAGGCGGg -3'
miRNA:   3'- acUCGCGCAU------------CAUGC-GGUAa----UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 103779 0.68 0.991656
Target:  5'- cGcGCGCGUgccaggccgugcGGUAgGCCAggUAGACGu -3'
miRNA:   3'- aCuCGCGCA------------UCAUgCGGUa-AUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 105912 0.67 0.994492
Target:  5'- cGGGUGUGUGGgugaaaccgAUGUCGggggUGGGCGGc -3'
miRNA:   3'- aCUCGCGCAUCa--------UGCGGUa---AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 106173 0.74 0.868103
Target:  5'- cGGGCGCGUGcacGUAgGCCGcgucaaaaUAGACGGu -3'
miRNA:   3'- aCUCGCGCAU---CAUgCGGUa-------AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 117126 0.71 0.961073
Target:  5'- gGAGCGCGagucGUACGUCA--AGGCGa -3'
miRNA:   3'- aCUCGCGCau--CAUGCGGUaaUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 117767 0.71 0.961073
Target:  5'- gGGGCGcCGUAGgACGCgGgauaAGACGGc -3'
miRNA:   3'- aCUCGC-GCAUCaUGCGgUaa--UCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.