miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 122768 0.67 0.994412
Target:  5'- gGAGCGCGUcccguGGgaacgugGCGCCGUUcucgucgcuuaccAGuACGGu -3'
miRNA:   3'- aCUCGCGCA-----UCa------UGCGGUAA-------------UC-UGCC- -5'
30220 5' -51.3 NC_006273.1 + 131461 0.66 0.998668
Target:  5'- -cAGCGCGUGuccgcuuucguggcGUACGCCGU--GGCGc -3'
miRNA:   3'- acUCGCGCAU--------------CAUGCGGUAauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 132719 0.67 0.996493
Target:  5'- gUGAuGCGaGUGGUgagaGCGCCGgggAGACGa -3'
miRNA:   3'- -ACU-CGCgCAUCA----UGCGGUaa-UCUGCc -5'
30220 5' -51.3 NC_006273.1 + 140759 0.68 0.991656
Target:  5'- cGAGCGCGUcagcaggccgGGUcgaugACGCCGgc-GACGa -3'
miRNA:   3'- aCUCGCGCA----------UCA-----UGCGGUaauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 140874 0.66 0.99874
Target:  5'- gGGGCGCGaGGUGCccGCC--UGGcCGGc -3'
miRNA:   3'- aCUCGCGCaUCAUG--CGGuaAUCuGCC- -5'
30220 5' -51.3 NC_006273.1 + 141746 0.7 0.975982
Target:  5'- aGGGCGCGccg-GCGCCAgUGGAUGc -3'
miRNA:   3'- aCUCGCGCaucaUGCGGUaAUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 143130 0.67 0.995242
Target:  5'- cGAGCGCuGU-GUG-GCCGUcuuucaggAGACGGg -3'
miRNA:   3'- aCUCGCG-CAuCAUgCGGUAa-------UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 143661 0.68 0.989198
Target:  5'- gGAGCGUcu-GUugGCCAcgagcGACGGg -3'
miRNA:   3'- aCUCGCGcauCAugCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 144194 0.69 0.984493
Target:  5'- gGAGCGCGUGGccgaGCgGUgcGACGa -3'
miRNA:   3'- aCUCGCGCAUCaug-CGgUAauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 147961 0.69 0.987773
Target:  5'- aGAGCaGCGUA--GCGCCGUguuGGCGc -3'
miRNA:   3'- aCUCG-CGCAUcaUGCGGUAau-CUGCc -5'
30220 5' -51.3 NC_006273.1 + 150203 0.73 0.896006
Target:  5'- gGAGCGCGacgagugGGUGCGCUcgcuGGCGGu -3'
miRNA:   3'- aCUCGCGCa------UCAUGCGGuaauCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 156500 0.71 0.953621
Target:  5'- aGGGCGUGgaucUGGUGCGCa---AGACGGc -3'
miRNA:   3'- aCUCGCGC----AUCAUGCGguaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 158756 0.68 0.989198
Target:  5'- cGGGuCGCGccAGUGCGCCGUc-GACGc -3'
miRNA:   3'- aCUC-GCGCa-UCAUGCGGUAauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 161322 0.67 0.994492
Target:  5'- cGaAGUGCGUGGUGCGCaaauccaAUUcGGCGu -3'
miRNA:   3'- aC-UCGCGCAUCAUGCGg------UAAuCUGCc -5'
30220 5' -51.3 NC_006273.1 + 165407 0.66 0.997852
Target:  5'- uUGAGCuGCaUGGcGgGCCAUUGGGUGGg -3'
miRNA:   3'- -ACUCG-CGcAUCaUgCGGUAAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 167254 0.69 0.984493
Target:  5'- aUGGGCgGCGUGGUGa-CCGUggcgguGGCGGg -3'
miRNA:   3'- -ACUCG-CGCAUCAUgcGGUAau----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 167851 0.66 0.99874
Target:  5'- aGAuGCGUGUGGa--GCCG-UAGACGa -3'
miRNA:   3'- aCU-CGCGCAUCaugCGGUaAUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 170748 0.69 0.987773
Target:  5'- -aGGCGUGUAGgaacaugAUGCCGUUgcAGACGc -3'
miRNA:   3'- acUCGCGCAUCa------UGCGGUAA--UCUGCc -5'
30220 5' -51.3 NC_006273.1 + 172175 0.7 0.967653
Target:  5'- gGAGCGUGUG--ACGCCGUcaaGCGGa -3'
miRNA:   3'- aCUCGCGCAUcaUGCGGUAaucUGCC- -5'
30220 5' -51.3 NC_006273.1 + 172208 0.66 0.997852
Target:  5'- cGAGgcCGCGccGGccGCGCCGcgAGACGGa -3'
miRNA:   3'- aCUC--GCGCa-UCa-UGCGGUaaUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.