Results 81 - 87 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30220 | 5' | -51.3 | NC_006273.1 | + | 210659 | 0.67 | 0.997008 |
Target: 5'- -uAGCGcCGggauGUGCGCCAggAGGcCGGc -3' miRNA: 3'- acUCGC-GCau--CAUGCGGUaaUCU-GCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 211865 | 0.67 | 0.995906 |
Target: 5'- aGAGCGCGUGauccAUGCUcgUGGcaACGGc -3' miRNA: 3'- aCUCGCGCAUca--UGCGGuaAUC--UGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 216497 | 0.7 | 0.975982 |
Target: 5'- cGAGCGUGUgauggugcccAGUGCGCCGUgccaGCGc -3' miRNA: 3'- aCUCGCGCA----------UCAUGCGGUAauc-UGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 222333 | 0.66 | 0.997459 |
Target: 5'- aUGcAGCGCacuGUACGCCGaUAcACGGg -3' miRNA: 3'- -AC-UCGCGcauCAUGCGGUaAUcUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 224226 | 0.72 | 0.925735 |
Target: 5'- -cAGUGCaUGGUAcCGCUAUUGGAUGGa -3' miRNA: 3'- acUCGCGcAUCAU-GCGGUAAUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 233847 | 0.68 | 0.992707 |
Target: 5'- -cAGCGUGUuGUuCGCCAggucgUAGACGa -3' miRNA: 3'- acUCGCGCAuCAuGCGGUa----AUCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 234869 | 0.68 | 0.989198 |
Target: 5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3' miRNA: 3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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