miRNA display CGI


Results 81 - 87 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 210659 0.67 0.997008
Target:  5'- -uAGCGcCGggauGUGCGCCAggAGGcCGGc -3'
miRNA:   3'- acUCGC-GCau--CAUGCGGUaaUCU-GCC- -5'
30220 5' -51.3 NC_006273.1 + 211865 0.67 0.995906
Target:  5'- aGAGCGCGUGauccAUGCUcgUGGcaACGGc -3'
miRNA:   3'- aCUCGCGCAUca--UGCGGuaAUC--UGCC- -5'
30220 5' -51.3 NC_006273.1 + 216497 0.7 0.975982
Target:  5'- cGAGCGUGUgauggugcccAGUGCGCCGUgccaGCGc -3'
miRNA:   3'- aCUCGCGCA----------UCAUGCGGUAauc-UGCc -5'
30220 5' -51.3 NC_006273.1 + 222333 0.66 0.997459
Target:  5'- aUGcAGCGCacuGUACGCCGaUAcACGGg -3'
miRNA:   3'- -AC-UCGCGcauCAUGCGGUaAUcUGCC- -5'
30220 5' -51.3 NC_006273.1 + 224226 0.72 0.925735
Target:  5'- -cAGUGCaUGGUAcCGCUAUUGGAUGGa -3'
miRNA:   3'- acUCGCGcAUCAU-GCGGUAAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 233847 0.68 0.992707
Target:  5'- -cAGCGUGUuGUuCGCCAggucgUAGACGa -3'
miRNA:   3'- acUCGCGCAuCAuGCGGUa----AUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 234869 0.68 0.989198
Target:  5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3'
miRNA:   3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.