miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 234869 0.68 0.989198
Target:  5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3'
miRNA:   3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 233847 0.68 0.992707
Target:  5'- -cAGCGUGUuGUuCGCCAggucgUAGACGa -3'
miRNA:   3'- acUCGCGCAuCAuGCGGUa----AUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 224226 0.72 0.925735
Target:  5'- -cAGUGCaUGGUAcCGCUAUUGGAUGGa -3'
miRNA:   3'- acUCGCGcAUCAU-GCGGUAAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 222333 0.66 0.997459
Target:  5'- aUGcAGCGCacuGUACGCCGaUAcACGGg -3'
miRNA:   3'- -AC-UCGCGcauCAUGCGGUaAUcUGCC- -5'
30220 5' -51.3 NC_006273.1 + 216497 0.7 0.975982
Target:  5'- cGAGCGUGUgauggugcccAGUGCGCCGUgccaGCGc -3'
miRNA:   3'- aCUCGCGCA----------UCAUGCGGUAauc-UGCc -5'
30220 5' -51.3 NC_006273.1 + 211865 0.67 0.995906
Target:  5'- aGAGCGCGUGauccAUGCUcgUGGcaACGGc -3'
miRNA:   3'- aCUCGCGCAUca--UGCGGuaAUC--UGCC- -5'
30220 5' -51.3 NC_006273.1 + 210659 0.67 0.997008
Target:  5'- -uAGCGcCGggauGUGCGCCAggAGGcCGGc -3'
miRNA:   3'- acUCGC-GCau--CAUGCGGUaaUCU-GCC- -5'
30220 5' -51.3 NC_006273.1 + 206513 0.69 0.980584
Target:  5'- -uGGCGCuUGGUGCGCgAcgaaGGACGGg -3'
miRNA:   3'- acUCGCGcAUCAUGCGgUaa--UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 205841 1.11 0.010955
Target:  5'- gUGAGCGCGUAGUACGCCAUUAGACGGc -3'
miRNA:   3'- -ACUCGCGCAUCAUGCGGUAAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 204322 0.68 0.992506
Target:  5'- gUGAGCGCGaaggccggcaugGGUAUGCauuCGUUgAGGCGGc -3'
miRNA:   3'- -ACUCGCGCa-----------UCAUGCG---GUAA-UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 203912 0.66 0.998193
Target:  5'- aGAGCGCGcc--GCGCgAggugUAGugGGc -3'
miRNA:   3'- aCUCGCGCaucaUGCGgUa---AUCugCC- -5'
30220 5' -51.3 NC_006273.1 + 203656 0.66 0.997852
Target:  5'- --uGCGCGUAGUcuucGCGCaac--GACGGc -3'
miRNA:   3'- acuCGCGCAUCA----UGCGguaauCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 203603 0.73 0.908601
Target:  5'- aGAGCGCGUAGU-CGUaGUUuugacuGACGGc -3'
miRNA:   3'- aCUCGCGCAUCAuGCGgUAAu-----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 202204 0.68 0.992707
Target:  5'- uUGAGCGUcuucauGUACGCCGUUuu-CGGc -3'
miRNA:   3'- -ACUCGCGcau---CAUGCGGUAAucuGCC- -5'
30220 5' -51.3 NC_006273.1 + 199631 0.73 0.907993
Target:  5'- gGAGCGCGUcuuccccggcuuuAGUgAUGCCAUcgggcAGGCGGa -3'
miRNA:   3'- aCUCGCGCA-------------UCA-UGCGGUAa----UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 197211 0.66 0.998193
Target:  5'- cGGGCuCGgcGUccCGCCGUccgAGACGGu -3'
miRNA:   3'- aCUCGcGCauCAu-GCGGUAa--UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 197183 0.71 0.949557
Target:  5'- cUGGGCGcCGUguucgGGUACuGCCcgcUGGACGGg -3'
miRNA:   3'- -ACUCGC-GCA-----UCAUG-CGGua-AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 196460 0.74 0.875407
Target:  5'- aGAGCuCGgcGUACGCCGccUUGGGCGu -3'
miRNA:   3'- aCUCGcGCauCAUGCGGU--AAUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 195754 0.66 0.99874
Target:  5'- uUGAGCGCGU----CGCCGcUAaaaaagaguGACGGg -3'
miRNA:   3'- -ACUCGCGCAucauGCGGUaAU---------CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 195030 0.68 0.99209
Target:  5'- cGAGCGCGgcuuugcaaucACGCCGcucGACGGg -3'
miRNA:   3'- aCUCGCGCauca-------UGCGGUaauCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.