miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 194931 0.68 0.989198
Target:  5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3'
miRNA:   3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 186053 0.71 0.949557
Target:  5'- cGGGUGCacgGUGGUAgUGCCGUUAGucugaGCGGg -3'
miRNA:   3'- aCUCGCG---CAUCAU-GCGGUAAUC-----UGCC- -5'
30220 5' -51.3 NC_006273.1 + 179219 0.67 0.996493
Target:  5'- -uAGCGCGgugacGUACGCCGcgGGGCu- -3'
miRNA:   3'- acUCGCGCau---CAUGCGGUaaUCUGcc -5'
30220 5' -51.3 NC_006273.1 + 177509 0.7 0.970628
Target:  5'- cGGGCGUGUG--GCGCCAgcgaaccGGCGGc -3'
miRNA:   3'- aCUCGCGCAUcaUGCGGUaau----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 176696 0.66 0.99874
Target:  5'- uUGAGCGUGcugcgcgAGUugGUgAccgAGGCGGu -3'
miRNA:   3'- -ACUCGCGCa------UCAugCGgUaa-UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 176289 0.66 0.997459
Target:  5'- cGuGCGCGUGagcaGCGCUAcucgcuguUUGGGCGGc -3'
miRNA:   3'- aCuCGCGCAUca--UGCGGU--------AAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 175989 0.66 0.99874
Target:  5'- ---uCGCGUG--ACGCCAgUUGGGCGGc -3'
miRNA:   3'- acucGCGCAUcaUGCGGU-AAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 172208 0.66 0.997852
Target:  5'- cGAGgcCGCGccGGccGCGCCGcgAGACGGa -3'
miRNA:   3'- aCUC--GCGCa-UCa-UGCGGUaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 172175 0.7 0.967653
Target:  5'- gGAGCGUGUG--ACGCCGUcaaGCGGa -3'
miRNA:   3'- aCUCGCGCAUcaUGCGGUAaucUGCC- -5'
30220 5' -51.3 NC_006273.1 + 170748 0.69 0.987773
Target:  5'- -aGGCGUGUAGgaacaugAUGCCGUUgcAGACGc -3'
miRNA:   3'- acUCGCGCAUCa------UGCGGUAA--UCUGCc -5'
30220 5' -51.3 NC_006273.1 + 167851 0.66 0.99874
Target:  5'- aGAuGCGUGUGGa--GCCG-UAGACGa -3'
miRNA:   3'- aCU-CGCGCAUCaugCGGUaAUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 167254 0.69 0.984493
Target:  5'- aUGGGCgGCGUGGUGa-CCGUggcgguGGCGGg -3'
miRNA:   3'- -ACUCG-CGCAUCAUgcGGUAau----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 165407 0.66 0.997852
Target:  5'- uUGAGCuGCaUGGcGgGCCAUUGGGUGGg -3'
miRNA:   3'- -ACUCG-CGcAUCaUgCGGUAAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 161322 0.67 0.994492
Target:  5'- cGaAGUGCGUGGUGCGCaaauccaAUUcGGCGu -3'
miRNA:   3'- aC-UCGCGCAUCAUGCGg------UAAuCUGCc -5'
30220 5' -51.3 NC_006273.1 + 158756 0.68 0.989198
Target:  5'- cGGGuCGCGccAGUGCGCCGUc-GACGc -3'
miRNA:   3'- aCUC-GCGCa-UCAUGCGGUAauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 156500 0.71 0.953621
Target:  5'- aGGGCGUGgaucUGGUGCGCa---AGACGGc -3'
miRNA:   3'- aCUCGCGC----AUCAUGCGguaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 150203 0.73 0.896006
Target:  5'- gGAGCGCGacgagugGGUGCGCUcgcuGGCGGu -3'
miRNA:   3'- aCUCGCGCa------UCAUGCGGuaauCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 147961 0.69 0.987773
Target:  5'- aGAGCaGCGUA--GCGCCGUguuGGCGc -3'
miRNA:   3'- aCUCG-CGCAUcaUGCGGUAau-CUGCc -5'
30220 5' -51.3 NC_006273.1 + 144194 0.69 0.984493
Target:  5'- gGAGCGCGUGGccgaGCgGUgcGACGa -3'
miRNA:   3'- aCUCGCGCAUCaug-CGgUAauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 143661 0.68 0.989198
Target:  5'- gGAGCGUcu-GUugGCCAcgagcGACGGg -3'
miRNA:   3'- aCUCGCGcauCAugCGGUaau--CUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.