Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30220 | 5' | -51.3 | NC_006273.1 | + | 143130 | 0.67 | 0.995242 |
Target: 5'- cGAGCGCuGU-GUG-GCCGUcuuucaggAGACGGg -3' miRNA: 3'- aCUCGCG-CAuCAUgCGGUAa-------UCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 141746 | 0.7 | 0.975982 |
Target: 5'- aGGGCGCGccg-GCGCCAgUGGAUGc -3' miRNA: 3'- aCUCGCGCaucaUGCGGUaAUCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 140874 | 0.66 | 0.99874 |
Target: 5'- gGGGCGCGaGGUGCccGCC--UGGcCGGc -3' miRNA: 3'- aCUCGCGCaUCAUG--CGGuaAUCuGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 140759 | 0.68 | 0.991656 |
Target: 5'- cGAGCGCGUcagcaggccgGGUcgaugACGCCGgc-GACGa -3' miRNA: 3'- aCUCGCGCA----------UCA-----UGCGGUaauCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 132719 | 0.67 | 0.996493 |
Target: 5'- gUGAuGCGaGUGGUgagaGCGCCGgggAGACGa -3' miRNA: 3'- -ACU-CGCgCAUCA----UGCGGUaa-UCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 131461 | 0.66 | 0.998668 |
Target: 5'- -cAGCGCGUGuccgcuuucguggcGUACGCCGU--GGCGc -3' miRNA: 3'- acUCGCGCAU--------------CAUGCGGUAauCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 122768 | 0.67 | 0.994412 |
Target: 5'- gGAGCGCGUcccguGGgaacgugGCGCCGUUcucgucgcuuaccAGuACGGu -3' miRNA: 3'- aCUCGCGCA-----UCa------UGCGGUAA-------------UC-UGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 117767 | 0.71 | 0.961073 |
Target: 5'- gGGGCGcCGUAGgACGCgGgauaAGACGGc -3' miRNA: 3'- aCUCGC-GCAUCaUGCGgUaa--UCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 117126 | 0.71 | 0.961073 |
Target: 5'- gGAGCGCGagucGUACGUCA--AGGCGa -3' miRNA: 3'- aCUCGCGCau--CAUGCGGUaaUCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 106173 | 0.74 | 0.868103 |
Target: 5'- cGGGCGCGUGcacGUAgGCCGcgucaaaaUAGACGGu -3' miRNA: 3'- aCUCGCGCAU---CAUgCGGUa-------AUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 105912 | 0.67 | 0.994492 |
Target: 5'- cGGGUGUGUGGgugaaaccgAUGUCGggggUGGGCGGc -3' miRNA: 3'- aCUCGCGCAUCa--------UGCGGUa---AUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 103779 | 0.68 | 0.991656 |
Target: 5'- cGcGCGCGUgccaggccgugcGGUAgGCCAggUAGACGu -3' miRNA: 3'- aCuCGCGCA------------UCAUgCGGUa-AUCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 102608 | 0.66 | 0.998487 |
Target: 5'- -cGGCGCGUAaaacgcugggguGUACGgCUAUgguacAGGCGGg -3' miRNA: 3'- acUCGCGCAU------------CAUGC-GGUAa----UCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 102225 | 0.66 | 0.997852 |
Target: 5'- cGAGCGCGUcucgauaaAGUugGCUucggucGAgGGg -3' miRNA: 3'- aCUCGCGCA--------UCAugCGGuaau--CUgCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 101864 | 0.66 | 0.998193 |
Target: 5'- aGAGCGCGUagcugugcucGGUGCGCaggucGAUGa -3' miRNA: 3'- aCUCGCGCA----------UCAUGCGguaauCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 100445 | 0.68 | 0.992506 |
Target: 5'- aUGGGCGCGcgucacgcgGCGCCGgugucGGCGGa -3' miRNA: 3'- -ACUCGCGCauca-----UGCGGUaau--CUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 93232 | 0.69 | 0.984493 |
Target: 5'- aGAGCGCGgcGUACGCUGguc-ACGu -3' miRNA: 3'- aCUCGCGCauCAUGCGGUaaucUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 88693 | 0.68 | 0.99365 |
Target: 5'- --uGCGCGUGGUucuGCGUCGUUAaGCGc -3' miRNA: 3'- acuCGCGCAUCA---UGCGGUAAUcUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 84821 | 0.66 | 0.998193 |
Target: 5'- cGAGCGUaagccGUggacGGUugGCCcgUGGGCcuGGg -3' miRNA: 3'- aCUCGCG-----CA----UCAugCGGuaAUCUG--CC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 83329 | 0.67 | 0.994412 |
Target: 5'- cGGGUggacccgGCGUGGUgggacccggcgGCGCCGU-GGugGGa -3' miRNA: 3'- aCUCG-------CGCAUCA-----------UGCGGUAaUCugCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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