Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30220 | 5' | -51.3 | NC_006273.1 | + | 72663 | 0.68 | 0.991433 |
Target: 5'- -uGGCGCGUAGUAgUGCUAggcacggcgagcUGGugGGg -3' miRNA: 3'- acUCGCGCAUCAU-GCGGUa-----------AUCugCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 67635 | 0.69 | 0.978373 |
Target: 5'- ---aCGCGUGGUggACGCCGUUaaGGGCGa -3' miRNA: 3'- acucGCGCAUCA--UGCGGUAA--UCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 2240 | 0.69 | 0.982621 |
Target: 5'- -uGGCGCGUGG-AUGCCGgccgAGACa- -3' miRNA: 3'- acUCGCGCAUCaUGCGGUaa--UCUGcc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 63757 | 0.69 | 0.984493 |
Target: 5'- -uGGCGCGUGGccgggcGCGCCucucggaGGACGGc -3' miRNA: 3'- acUCGCGCAUCa-----UGCGGuaa----UCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 144194 | 0.69 | 0.984493 |
Target: 5'- gGAGCGCGUGGccgaGCgGUgcGACGa -3' miRNA: 3'- aCUCGCGCAUCaug-CGgUAauCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 167254 | 0.69 | 0.984493 |
Target: 5'- aUGGGCgGCGUGGUGa-CCGUggcgguGGCGGg -3' miRNA: 3'- -ACUCG-CGCAUCAUgcGGUAau----CUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 147961 | 0.69 | 0.987773 |
Target: 5'- aGAGCaGCGUA--GCGCCGUguuGGCGc -3' miRNA: 3'- aCUCG-CGCAUcaUGCGGUAau-CUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 143661 | 0.68 | 0.989198 |
Target: 5'- gGAGCGUcu-GUugGCCAcgagcGACGGg -3' miRNA: 3'- aCUCGCGcauCAugCGGUaau--CUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 194931 | 0.68 | 0.989198 |
Target: 5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3' miRNA: 3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 141746 | 0.7 | 0.975982 |
Target: 5'- aGGGCGCGccg-GCGCCAgUGGAUGc -3' miRNA: 3'- aCUCGCGCaucaUGCGGUaAUCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 216497 | 0.7 | 0.975982 |
Target: 5'- cGAGCGUGUgauggugcccAGUGCGCCGUgccaGCGc -3' miRNA: 3'- aCUCGCGCA----------UCAUGCGGUAauc-UGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 177509 | 0.7 | 0.970628 |
Target: 5'- cGGGCGUGUG--GCGCCAgcgaaccGGCGGc -3' miRNA: 3'- aCUCGCGCAUcaUGCGGUaau----CUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 73870 | 0.74 | 0.868103 |
Target: 5'- gUGAGCGCGgccgacaugcgGGcGCGCCAcagAGAUGGa -3' miRNA: 3'- -ACUCGCGCa----------UCaUGCGGUaa-UCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 106173 | 0.74 | 0.868103 |
Target: 5'- cGGGCGCGUGcacGUAgGCCGcgucaaaaUAGACGGu -3' miRNA: 3'- aCUCGCGCAU---CAUgCGGUa-------AUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 150203 | 0.73 | 0.896006 |
Target: 5'- gGAGCGCGacgagugGGUGCGCUcgcuGGCGGu -3' miRNA: 3'- aCUCGCGCa------UCAUGCGGuaauCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 199631 | 0.73 | 0.907993 |
Target: 5'- gGAGCGCGUcuuccccggcuuuAGUgAUGCCAUcgggcAGGCGGa -3' miRNA: 3'- aCUCGCGCA-------------UCA-UGCGGUAa----UCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 186053 | 0.71 | 0.949557 |
Target: 5'- cGGGUGCacgGUGGUAgUGCCGUUAGucugaGCGGg -3' miRNA: 3'- aCUCGCG---CAUCAU-GCGGUAAUC-----UGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 197183 | 0.71 | 0.949557 |
Target: 5'- cUGGGCGcCGUguucgGGUACuGCCcgcUGGACGGg -3' miRNA: 3'- -ACUCGC-GCA-----UCAUG-CGGua-AUCUGCC- -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 117126 | 0.71 | 0.961073 |
Target: 5'- gGAGCGCGagucGUACGUCA--AGGCGa -3' miRNA: 3'- aCUCGCGCau--CAUGCGGUaaUCUGCc -5' |
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30220 | 5' | -51.3 | NC_006273.1 | + | 39186 | 0.71 | 0.961073 |
Target: 5'- cGAGCgGCGUugcggGGUuggaggagacgGCGCCcuUUGGACGGg -3' miRNA: 3'- aCUCG-CGCA-----UCA-----------UGCGGu-AAUCUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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