miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 143661 0.68 0.989198
Target:  5'- gGAGCGUcu-GUugGCCAcgagcGACGGg -3'
miRNA:   3'- aCUCGCGcauCAugCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 147961 0.69 0.987773
Target:  5'- aGAGCaGCGUA--GCGCCGUguuGGCGc -3'
miRNA:   3'- aCUCG-CGCAUcaUGCGGUAau-CUGCc -5'
30220 5' -51.3 NC_006273.1 + 167254 0.69 0.984493
Target:  5'- aUGGGCgGCGUGGUGa-CCGUggcgguGGCGGg -3'
miRNA:   3'- -ACUCG-CGCAUCAUgcGGUAau----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 144194 0.69 0.984493
Target:  5'- gGAGCGCGUGGccgaGCgGUgcGACGa -3'
miRNA:   3'- aCUCGCGCAUCaug-CGgUAauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 63757 0.69 0.984493
Target:  5'- -uGGCGCGUGGccgggcGCGCCucucggaGGACGGc -3'
miRNA:   3'- acUCGCGCAUCa-----UGCGGuaa----UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 2240 0.69 0.982621
Target:  5'- -uGGCGCGUGG-AUGCCGgccgAGACa- -3'
miRNA:   3'- acUCGCGCAUCaUGCGGUaa--UCUGcc -5'
30220 5' -51.3 NC_006273.1 + 67635 0.69 0.978373
Target:  5'- ---aCGCGUGGUggACGCCGUUaaGGGCGa -3'
miRNA:   3'- acucGCGCAUCA--UGCGGUAA--UCUGCc -5'
30220 5' -51.3 NC_006273.1 + 93232 0.69 0.984493
Target:  5'- aGAGCGCGgcGUACGCUGguc-ACGu -3'
miRNA:   3'- aCUCGCGCauCAUGCGGUaaucUGCc -5'
30220 5' -51.3 NC_006273.1 + 15197 0.69 0.987773
Target:  5'- -cGGUGcCGU-GUACGCCAUccAGAUGGa -3'
miRNA:   3'- acUCGC-GCAuCAUGCGGUAa-UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 170748 0.69 0.987773
Target:  5'- -aGGCGUGUAGgaacaugAUGCCGUUgcAGACGc -3'
miRNA:   3'- acUCGCGCAUCa------UGCGGUAA--UCUGCc -5'
30220 5' -51.3 NC_006273.1 + 38 0.68 0.989198
Target:  5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3'
miRNA:   3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 79915 0.68 0.989198
Target:  5'- cGAGCGUGUAcGUcuGCGCCGgc-GACa- -3'
miRNA:   3'- aCUCGCGCAU-CA--UGCGGUaauCUGcc -5'
30220 5' -51.3 NC_006273.1 + 206513 0.69 0.980584
Target:  5'- -uGGCGCuUGGUGCGCgAcgaaGGACGGg -3'
miRNA:   3'- acUCGCGcAUCAUGCGgUaa--UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 172175 0.7 0.967653
Target:  5'- gGAGCGUGUG--ACGCCGUcaaGCGGa -3'
miRNA:   3'- aCUCGCGCAUcaUGCGGUAaucUGCC- -5'
30220 5' -51.3 NC_006273.1 + 117767 0.71 0.961073
Target:  5'- gGGGCGcCGUAGgACGCgGgauaAGACGGc -3'
miRNA:   3'- aCUCGC-GCAUCaUGCGgUaa--UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 156500 0.71 0.953621
Target:  5'- aGGGCGUGgaucUGGUGCGCa---AGACGGc -3'
miRNA:   3'- aCUCGCGC----AUCAUGCGguaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 2290 0.71 0.949557
Target:  5'- cUGGGCGcCGUguucgGGUACuGCCcgcUGGACGGg -3'
miRNA:   3'- -ACUCGC-GCA-----UCAUG-CGGua-AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 224226 0.72 0.925735
Target:  5'- -cAGUGCaUGGUAcCGCUAUUGGAUGGa -3'
miRNA:   3'- acUCGCGcAUCAU-GCGGUAAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 203603 0.73 0.908601
Target:  5'- aGAGCGCGUAGU-CGUaGUUuugacuGACGGc -3'
miRNA:   3'- aCUCGCGCAUCAuGCGgUAAu-----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 175989 0.66 0.99874
Target:  5'- ---uCGCGUG--ACGCCAgUUGGGCGGc -3'
miRNA:   3'- acucGCGCAUcaUGCGGU-AAUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.