miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 172208 0.66 0.997852
Target:  5'- cGAGgcCGCGccGGccGCGCCGcgAGACGGa -3'
miRNA:   3'- aCUC--GCGCa-UCa-UGCGGUaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 197211 0.66 0.998193
Target:  5'- cGGGCuCGgcGUccCGCCGUccgAGACGGu -3'
miRNA:   3'- aCUCGcGCauCAu-GCGGUAa--UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 203912 0.66 0.998193
Target:  5'- aGAGCGCGcc--GCGCgAggugUAGugGGc -3'
miRNA:   3'- aCUCGCGCaucaUGCGgUa---AUCugCC- -5'
30220 5' -51.3 NC_006273.1 + 100445 0.68 0.992506
Target:  5'- aUGGGCGCGcgucacgcgGCGCCGgugucGGCGGa -3'
miRNA:   3'- -ACUCGCGCauca-----UGCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 204322 0.68 0.992506
Target:  5'- gUGAGCGCGaaggccggcaugGGUAUGCauuCGUUgAGGCGGc -3'
miRNA:   3'- -ACUCGCGCa-----------UCAUGCG---GUAA-UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 203603 0.73 0.908601
Target:  5'- aGAGCGCGUAGU-CGUaGUUuugacuGACGGc -3'
miRNA:   3'- aCUCGCGCAUCAuGCGgUAAu-----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 224226 0.72 0.925735
Target:  5'- -cAGUGCaUGGUAcCGCUAUUGGAUGGa -3'
miRNA:   3'- acUCGCGcAUCAU-GCGGUAAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 2290 0.71 0.949557
Target:  5'- cUGGGCGcCGUguucgGGUACuGCCcgcUGGACGGg -3'
miRNA:   3'- -ACUCGC-GCA-----UCAUG-CGGua-AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 156500 0.71 0.953621
Target:  5'- aGGGCGUGgaucUGGUGCGCa---AGACGGc -3'
miRNA:   3'- aCUCGCGC----AUCAUGCGguaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 117767 0.71 0.961073
Target:  5'- gGGGCGcCGUAGgACGCgGgauaAGACGGc -3'
miRNA:   3'- aCUCGC-GCAUCaUGCGgUaa--UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 172175 0.7 0.967653
Target:  5'- gGAGCGUGUG--ACGCCGUcaaGCGGa -3'
miRNA:   3'- aCUCGCGCAUcaUGCGGUAaucUGCC- -5'
30220 5' -51.3 NC_006273.1 + 206513 0.69 0.980584
Target:  5'- -uGGCGCuUGGUGCGCgAcgaaGGACGGg -3'
miRNA:   3'- acUCGCGcAUCAUGCGgUaa--UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 93232 0.69 0.984493
Target:  5'- aGAGCGCGgcGUACGCUGguc-ACGu -3'
miRNA:   3'- aCUCGCGCauCAUGCGGUaaucUGCc -5'
30220 5' -51.3 NC_006273.1 + 15197 0.69 0.987773
Target:  5'- -cGGUGcCGU-GUACGCCAUccAGAUGGa -3'
miRNA:   3'- acUCGC-GCAuCAUGCGGUAa-UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 170748 0.69 0.987773
Target:  5'- -aGGCGUGUAGgaacaugAUGCCGUUgcAGACGc -3'
miRNA:   3'- acUCGCGCAUCa------UGCGGUAA--UCUGCc -5'
30220 5' -51.3 NC_006273.1 + 38 0.68 0.989198
Target:  5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3'
miRNA:   3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 79915 0.68 0.989198
Target:  5'- cGAGCGUGUAcGUcuGCGCCGgc-GACa- -3'
miRNA:   3'- aCUCGCGCAU-CA--UGCGGUaauCUGcc -5'
30220 5' -51.3 NC_006273.1 + 158756 0.68 0.989198
Target:  5'- cGGGuCGCGccAGUGCGCCGUc-GACGc -3'
miRNA:   3'- aCUC-GCGCa-UCAUGCGGUAauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 234869 0.68 0.989198
Target:  5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3'
miRNA:   3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 195030 0.68 0.99209
Target:  5'- cGAGCGCGgcuuugcaaucACGCCGcucGACGGg -3'
miRNA:   3'- aCUCGCGCauca-------UGCGGUaauCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.