miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 38954 0.68 0.992707
Target:  5'- -cAGCGUGUuGUuCGCCAggucgUAGACGa -3'
miRNA:   3'- acUCGCGCAuCAuGCGGUa----AUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 2290 0.71 0.949557
Target:  5'- cUGGGCGcCGUguucgGGUACuGCCcgcUGGACGGg -3'
miRNA:   3'- -ACUCGC-GCA-----UCAUG-CGGua-AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 65616 0.66 0.998193
Target:  5'- --cGUGCGggGGUgACGCUAUUAGugGu -3'
miRNA:   3'- acuCGCGCa-UCA-UGCGGUAAUCugCc -5'
30220 5' -51.3 NC_006273.1 + 176289 0.66 0.997459
Target:  5'- cGuGCGCGUGagcaGCGCUAcucgcuguUUGGGCGGc -3'
miRNA:   3'- aCuCGCGCAUca--UGCGGU--------AAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 100445 0.68 0.992506
Target:  5'- aUGGGCGCGcgucacgcgGCGCCGgugucGGCGGa -3'
miRNA:   3'- -ACUCGCGCauca-----UGCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 224226 0.72 0.925735
Target:  5'- -cAGUGCaUGGUAcCGCUAUUGGAUGGa -3'
miRNA:   3'- acUCGCGcAUCAU-GCGGUAAUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 58636 0.66 0.997459
Target:  5'- --cGCGCGUcaugAGUcccaaagaucugACGCCGUUcuuGACGGc -3'
miRNA:   3'- acuCGCGCA----UCA------------UGCGGUAAu--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 203603 0.73 0.908601
Target:  5'- aGAGCGCGUAGU-CGUaGUUuugacuGACGGc -3'
miRNA:   3'- aCUCGCGCAUCAuGCGgUAAu-----CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 196460 0.74 0.875407
Target:  5'- aGAGCuCGgcGUACGCCGccUUGGGCGu -3'
miRNA:   3'- aCUCGcGCauCAUGCGGU--AAUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 170748 0.69 0.987773
Target:  5'- -aGGCGUGUAGgaacaugAUGCCGUUgcAGACGc -3'
miRNA:   3'- acUCGCGCAUCa------UGCGGUAA--UCUGCc -5'
30220 5' -51.3 NC_006273.1 + 202204 0.68 0.992707
Target:  5'- uUGAGCGUcuucauGUACGCCGUUuu-CGGc -3'
miRNA:   3'- -ACUCGCGcau---CAUGCGGUAAucuGCC- -5'
30220 5' -51.3 NC_006273.1 + 161322 0.67 0.994492
Target:  5'- cGaAGUGCGUGGUGCGCaaauccaAUUcGGCGu -3'
miRNA:   3'- aC-UCGCGCAUCAUGCGg------UAAuCUGCc -5'
30220 5' -51.3 NC_006273.1 + 234869 0.68 0.989198
Target:  5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3'
miRNA:   3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 38 0.68 0.989198
Target:  5'- gGGGCGCGgcggGGUGggugugUGCCGgguguGGCGGg -3'
miRNA:   3'- aCUCGCGCa---UCAU------GCGGUaau--CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 206513 0.69 0.980584
Target:  5'- -uGGCGCuUGGUGCGCgAcgaaGGACGGg -3'
miRNA:   3'- acUCGCGcAUCAUGCGgUaa--UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 156500 0.71 0.953621
Target:  5'- aGGGCGUGgaucUGGUGCGCa---AGACGGc -3'
miRNA:   3'- aCUCGCGC----AUCAUGCGguaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 195754 0.66 0.99874
Target:  5'- uUGAGCGCGU----CGCCGcUAaaaaagaguGACGGg -3'
miRNA:   3'- -ACUCGCGCAucauGCGGUaAU---------CUGCC- -5'
30220 5' -51.3 NC_006273.1 + 84821 0.66 0.998193
Target:  5'- cGAGCGUaagccGUggacGGUugGCCcgUGGGCcuGGg -3'
miRNA:   3'- aCUCGCG-----CA----UCAugCGGuaAUCUG--CC- -5'
30220 5' -51.3 NC_006273.1 + 172208 0.66 0.997852
Target:  5'- cGAGgcCGCGccGGccGCGCCGcgAGACGGa -3'
miRNA:   3'- aCUC--GCGCa-UCa-UGCGGUaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 222333 0.66 0.997459
Target:  5'- aUGcAGCGCacuGUACGCCGaUAcACGGg -3'
miRNA:   3'- -AC-UCGCGcauCAUGCGGUaAUcUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.