miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30220 5' -51.3 NC_006273.1 + 197183 0.71 0.949557
Target:  5'- cUGGGCGcCGUguucgGGUACuGCCcgcUGGACGGg -3'
miRNA:   3'- -ACUCGC-GCA-----UCAUG-CGGua-AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 233847 0.68 0.992707
Target:  5'- -cAGCGUGUuGUuCGCCAggucgUAGACGa -3'
miRNA:   3'- acUCGCGCAuCAuGCGGUa----AUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 42421 0.67 0.995517
Target:  5'- cGAGCGCGcgcccaaaaagguGUGCGCCGacu-GCGGg -3'
miRNA:   3'- aCUCGCGCau-----------CAUGCGGUaaucUGCC- -5'
30220 5' -51.3 NC_006273.1 + 186053 0.71 0.949557
Target:  5'- cGGGUGCacgGUGGUAgUGCCGUUAGucugaGCGGg -3'
miRNA:   3'- aCUCGCG---CAUCAU-GCGGUAAUC-----UGCC- -5'
30220 5' -51.3 NC_006273.1 + 106173 0.74 0.868103
Target:  5'- cGGGCGCGUGcacGUAgGCCGcgucaaaaUAGACGGu -3'
miRNA:   3'- aCUCGCGCAU---CAUgCGGUa-------AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 141746 0.7 0.975982
Target:  5'- aGGGCGCGccg-GCGCCAgUGGAUGc -3'
miRNA:   3'- aCUCGCGCaucaUGCGGUaAUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 67635 0.69 0.978373
Target:  5'- ---aCGCGUGGUggACGCCGUUaaGGGCGa -3'
miRNA:   3'- acucGCGCAUCA--UGCGGUAA--UCUGCc -5'
30220 5' -51.3 NC_006273.1 + 140874 0.66 0.99874
Target:  5'- gGGGCGCGaGGUGCccGCC--UGGcCGGc -3'
miRNA:   3'- aCUCGCGCaUCAUG--CGGuaAUCuGCC- -5'
30220 5' -51.3 NC_006273.1 + 88693 0.68 0.99365
Target:  5'- --uGCGCGUGGUucuGCGUCGUUAaGCGc -3'
miRNA:   3'- acuCGCGCAUCA---UGCGGUAAUcUGCc -5'
30220 5' -51.3 NC_006273.1 + 122768 0.67 0.994412
Target:  5'- gGAGCGCGUcccguGGgaacgugGCGCCGUUcucgucgcuuaccAGuACGGu -3'
miRNA:   3'- aCUCGCGCA-----UCa------UGCGGUAA-------------UC-UGCC- -5'
30220 5' -51.3 NC_006273.1 + 105912 0.67 0.994492
Target:  5'- cGGGUGUGUGGgugaaaccgAUGUCGggggUGGGCGGc -3'
miRNA:   3'- aCUCGCGCAUCa--------UGCGGUa---AUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 143130 0.67 0.995242
Target:  5'- cGAGCGCuGU-GUG-GCCGUcuuucaggAGACGGg -3'
miRNA:   3'- aCUCGCG-CAuCAUgCGGUAa-------UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 72798 0.68 0.992707
Target:  5'- cGGGCGgGUAGa--GCCGc-AGACGGc -3'
miRNA:   3'- aCUCGCgCAUCaugCGGUaaUCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 140759 0.68 0.991656
Target:  5'- cGAGCGCGUcagcaggccgGGUcgaugACGCCGgc-GACGa -3'
miRNA:   3'- aCUCGCGCA----------UCA-----UGCGGUaauCUGCc -5'
30220 5' -51.3 NC_006273.1 + 103779 0.68 0.991656
Target:  5'- cGcGCGCGUgccaggccgugcGGUAgGCCAggUAGACGu -3'
miRNA:   3'- aCuCGCGCA------------UCAUgCGGUa-AUCUGCc -5'
30220 5' -51.3 NC_006273.1 + 13300 0.68 0.992707
Target:  5'- cGAgGCGgGUAGgcUGCCGaacGACGGa -3'
miRNA:   3'- aCU-CGCgCAUCauGCGGUaauCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 63757 0.69 0.984493
Target:  5'- -uGGCGCGUGGccgggcGCGCCucucggaGGACGGc -3'
miRNA:   3'- acUCGCGCAUCa-----UGCGGuaa----UCUGCC- -5'
30220 5' -51.3 NC_006273.1 + 2240 0.69 0.982621
Target:  5'- -uGGCGCGUGG-AUGCCGgccgAGACa- -3'
miRNA:   3'- acUCGCGCAUCaUGCGGUaa--UCUGcc -5'
30220 5' -51.3 NC_006273.1 + 961 0.66 0.998487
Target:  5'- cGGGCGUGcUGGgcgccgGCGCCGgua-ACGGg -3'
miRNA:   3'- aCUCGCGC-AUCa-----UGCGGUaaucUGCC- -5'
30220 5' -51.3 NC_006273.1 + 102608 0.66 0.998487
Target:  5'- -cGGCGCGUAaaacgcugggguGUACGgCUAUgguacAGGCGGg -3'
miRNA:   3'- acUCGCGCAU------------CAUGC-GGUAa----UCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.