miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30221 3' -60.5 NC_006273.1 + 164270 0.66 0.844284
Target:  5'- uGCCGCCguCGGUCgaucagguacucgcaGGuguGCGCGuCGGCGCc -3'
miRNA:   3'- cUGGCGG--GCUAG---------------CCu--CGUGC-GUCGCG- -5'
30221 3' -60.5 NC_006273.1 + 44894 0.66 0.844284
Target:  5'- --aCGCCaCG-UCGGAGCccuGCGCgccacaacgccguccGGCGCa -3'
miRNA:   3'- cugGCGG-GCuAGCCUCG---UGCG---------------UCGCG- -5'
30221 3' -60.5 NC_006273.1 + 2435 0.66 0.841238
Target:  5'- uGCUGCCCGAgcuggacCGcGAGCAgugggaGCGGcCGCg -3'
miRNA:   3'- cUGGCGGGCUa------GC-CUCGUg-----CGUC-GCG- -5'
30221 3' -60.5 NC_006273.1 + 92213 0.66 0.841238
Target:  5'- aGACgGUgCGAgcagUUGGGG-AUGCGGCGCg -3'
miRNA:   3'- -CUGgCGgGCU----AGCCUCgUGCGUCGCG- -5'
30221 3' -60.5 NC_006273.1 + 164786 0.66 0.841238
Target:  5'- aGCCGUCUGAUUuGGGCuuguagccaGCAGUGCu -3'
miRNA:   3'- cUGGCGGGCUAGcCUCGug-------CGUCGCG- -5'
30221 3' -60.5 NC_006273.1 + 90739 0.66 0.841238
Target:  5'- cGCCGCCuCGAUCaGcaCACGCGGCu- -3'
miRNA:   3'- cUGGCGG-GCUAGcCucGUGCGUCGcg -5'
30221 3' -60.5 NC_006273.1 + 197328 0.66 0.841238
Target:  5'- uGCUGCCCGAgcuggacCGcGAGCAgugggaGCGGcCGCg -3'
miRNA:   3'- cUGGCGGGCUa------GC-CUCGUg-----CGUC-GCG- -5'
30221 3' -60.5 NC_006273.1 + 196660 0.66 0.841238
Target:  5'- aGGCCGaaCGGUgaaucuuggcgUGGcGCACGCAGCGg -3'
miRNA:   3'- -CUGGCggGCUA-----------GCCuCGUGCGUCGCg -5'
30221 3' -60.5 NC_006273.1 + 131041 0.66 0.841238
Target:  5'- cGCCGCCauuuGAcuuuaCGGGGCA-GCAGCuGCg -3'
miRNA:   3'- cUGGCGGg---CUa----GCCUCGUgCGUCG-CG- -5'
30221 3' -60.5 NC_006273.1 + 139242 0.66 0.841238
Target:  5'- cGCUGCUCc-UCGGAGCACG-GGCGa -3'
miRNA:   3'- cUGGCGGGcuAGCCUCGUGCgUCGCg -5'
30221 3' -60.5 NC_006273.1 + 117221 0.66 0.841238
Target:  5'- aGGCCGCCaCGc-CGGcGGCugG-GGCGCg -3'
miRNA:   3'- -CUGGCGG-GCuaGCC-UCGugCgUCGCG- -5'
30221 3' -60.5 NC_006273.1 + 151335 0.66 0.840473
Target:  5'- -uCCGCCCGccgcuucgCGGcucauuuGGCGC-CGGCGCg -3'
miRNA:   3'- cuGGCGGGCua------GCC-------UCGUGcGUCGCG- -5'
30221 3' -60.5 NC_006273.1 + 93311 0.66 0.833507
Target:  5'- aGCCGUgguaaCCG-UCGccGCugGCGGCGCu -3'
miRNA:   3'- cUGGCG-----GGCuAGCcuCGugCGUCGCG- -5'
30221 3' -60.5 NC_006273.1 + 142432 0.66 0.833507
Target:  5'- uACCGCgCGcgUGu-GCGCGCGuGCGCg -3'
miRNA:   3'- cUGGCGgGCuaGCcuCGUGCGU-CGCG- -5'
30221 3' -60.5 NC_006273.1 + 95205 0.66 0.833507
Target:  5'- cGGCCGCCCagcCGGGGU---CGGCGCc -3'
miRNA:   3'- -CUGGCGGGcuaGCCUCGugcGUCGCG- -5'
30221 3' -60.5 NC_006273.1 + 57677 0.66 0.833507
Target:  5'- aGCCGUCUuGUaCGGcuucAGC-CGCAGCGCc -3'
miRNA:   3'- cUGGCGGGcUA-GCC----UCGuGCGUCGCG- -5'
30221 3' -60.5 NC_006273.1 + 134038 0.66 0.832725
Target:  5'- cGCCGCCUGGUUGGuguugcccuccacGGCgauACGCAGUuCg -3'
miRNA:   3'- cUGGCGGGCUAGCC-------------UCG---UGCGUCGcG- -5'
30221 3' -60.5 NC_006273.1 + 82910 0.66 0.825614
Target:  5'- gGugCGCUCGGagCGGcuggaGGCGCaGCuGCGCg -3'
miRNA:   3'- -CugGCGGGCUa-GCC-----UCGUG-CGuCGCG- -5'
30221 3' -60.5 NC_006273.1 + 105838 0.66 0.825614
Target:  5'- aGAgCGUcacagCCGAggCGGcGCgGCGCAGCGCc -3'
miRNA:   3'- -CUgGCG-----GGCUa-GCCuCG-UGCGUCGCG- -5'
30221 3' -60.5 NC_006273.1 + 136695 0.66 0.825614
Target:  5'- cGACCGgCCGGUCGccGC-CGCcGCGg -3'
miRNA:   3'- -CUGGCgGGCUAGCcuCGuGCGuCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.