miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30222 3' -55.3 NC_006273.1 + 147516 0.66 0.968066
Target:  5'- gGCGGCCCgcucgcucgggaggcGAUGG-GGGCGCGccGAUGa -3'
miRNA:   3'- gUGUCGGG---------------CUACCaCCUGUGC--CUAUa -5'
30222 3' -55.3 NC_006273.1 + 29129 0.66 0.966845
Target:  5'- ---cGCCCu-UGGUGGAgACGGAg-- -3'
miRNA:   3'- guguCGGGcuACCACCUgUGCCUaua -5'
30222 3' -55.3 NC_006273.1 + 233321 0.66 0.966845
Target:  5'- uGCGGUggauGUGGUGGGCugGGGUGg -3'
miRNA:   3'- gUGUCGggc-UACCACCUGugCCUAUa -5'
30222 3' -55.3 NC_006273.1 + 171371 0.66 0.963647
Target:  5'- cCGC-GCCC-AUGGUGGcucgagguCACGGAUGc -3'
miRNA:   3'- -GUGuCGGGcUACCACCu-------GUGCCUAUa -5'
30222 3' -55.3 NC_006273.1 + 143794 0.66 0.960241
Target:  5'- cCGCAGCCaGAccgcagUGGUGGcCACGGugGUGUc -3'
miRNA:   3'- -GUGUCGGgCU------ACCACCuGUGCC--UAUA- -5'
30222 3' -55.3 NC_006273.1 + 56054 0.66 0.952781
Target:  5'- aGCAGCCUcuucGUGGccGGACACGGcgAg -3'
miRNA:   3'- gUGUCGGGc---UACCa-CCUGUGCCuaUa -5'
30222 3' -55.3 NC_006273.1 + 217036 0.67 0.94872
Target:  5'- gCGCGGUUCGGUGGUGGcgaACGGc--- -3'
miRNA:   3'- -GUGUCGGGCUACCACCug-UGCCuaua -5'
30222 3' -55.3 NC_006273.1 + 107365 0.67 0.94872
Target:  5'- uGCAGCCCGgcGGUGuuccGGCG-GGGUAa -3'
miRNA:   3'- gUGUCGGGCuaCCAC----CUGUgCCUAUa -5'
30222 3' -55.3 NC_006273.1 + 149423 0.67 0.944434
Target:  5'- cCGCuGCCCGAUGGcacgggGGGCgACGGc--- -3'
miRNA:   3'- -GUGuCGGGCUACCa-----CCUG-UGCCuaua -5'
30222 3' -55.3 NC_006273.1 + 191468 0.67 0.93992
Target:  5'- --uGGCCUGAUGGUGGAaguCGGc--- -3'
miRNA:   3'- gugUCGGGCUACCACCUgu-GCCuaua -5'
30222 3' -55.3 NC_006273.1 + 36752 0.67 0.934688
Target:  5'- -uCGGCCCGAUGGUcgggaugcaccaaGGGCACGu---- -3'
miRNA:   3'- guGUCGGGCUACCA-------------CCUGUGCcuaua -5'
30222 3' -55.3 NC_006273.1 + 199656 0.67 0.9302
Target:  5'- aCACGgcGCCCGAgaucugGGUcuccGGGCACGGGc-- -3'
miRNA:   3'- -GUGU--CGGGCUa-----CCA----CCUGUGCCUaua -5'
30222 3' -55.3 NC_006273.1 + 152013 0.68 0.919555
Target:  5'- aGCAGCCCGAc-GUGGccCGCGGGUc- -3'
miRNA:   3'- gUGUCGGGCUacCACCu-GUGCCUAua -5'
30222 3' -55.3 NC_006273.1 + 94513 0.68 0.913885
Target:  5'- cCGCGGCCCGG-GG-GGACccgaGCGGGg-- -3'
miRNA:   3'- -GUGUCGGGCUaCCaCCUG----UGCCUaua -5'
30222 3' -55.3 NC_006273.1 + 211275 0.68 0.90617
Target:  5'- uCACAGCCCGAaauggaggccgcguUGGUGGccccggugGCGCGuGAc-- -3'
miRNA:   3'- -GUGUCGGGCU--------------ACCACC--------UGUGC-CUaua -5'
30222 3' -55.3 NC_006273.1 + 28156 0.69 0.888925
Target:  5'- aCACGGUCCG-UGG-GaGACGCGGGUu- -3'
miRNA:   3'- -GUGUCGGGCuACCaC-CUGUGCCUAua -5'
30222 3' -55.3 NC_006273.1 + 4586 0.69 0.888925
Target:  5'- gACGGCagCGGUGGUGGcGCugGGGg-- -3'
miRNA:   3'- gUGUCGg-GCUACCACC-UGugCCUaua -5'
30222 3' -55.3 NC_006273.1 + 71734 0.69 0.888925
Target:  5'- gACGuccGCCCGGcggUGGUGGugGCGGcgGc -3'
miRNA:   3'- gUGU---CGGGCU---ACCACCugUGCCuaUa -5'
30222 3' -55.3 NC_006273.1 + 8749 0.69 0.888925
Target:  5'- gACGGUCCacugaGGUGGcaggGGACACGGAa-- -3'
miRNA:   3'- gUGUCGGG-----CUACCa---CCUGUGCCUaua -5'
30222 3' -55.3 NC_006273.1 + 215275 0.69 0.875117
Target:  5'- -cCGGCUgCGAUGGUGGAUcCGGAg-- -3'
miRNA:   3'- guGUCGG-GCUACCACCUGuGCCUaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.