miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30222 3' -55.3 NC_006273.1 + 206993 1.05 0.008408
Target:  5'- aCACAGCCCGAUGGUGGACACGGAUAUc -3'
miRNA:   3'- -GUGUCGGGCUACCACCUGUGCCUAUA- -5'
30222 3' -55.3 NC_006273.1 + 94513 0.68 0.913885
Target:  5'- cCGCGGCCCGG-GG-GGACccgaGCGGGg-- -3'
miRNA:   3'- -GUGUCGGGCUaCCaCCUG----UGCCUaua -5'
30222 3' -55.3 NC_006273.1 + 152013 0.68 0.919555
Target:  5'- aGCAGCCCGAc-GUGGccCGCGGGUc- -3'
miRNA:   3'- gUGUCGGGCUacCACCu-GUGCCUAua -5'
30222 3' -55.3 NC_006273.1 + 36752 0.67 0.934688
Target:  5'- -uCGGCCCGAUGGUcgggaugcaccaaGGGCACGu---- -3'
miRNA:   3'- guGUCGGGCUACCA-------------CCUGUGCcuaua -5'
30222 3' -55.3 NC_006273.1 + 191468 0.67 0.93992
Target:  5'- --uGGCCUGAUGGUGGAaguCGGc--- -3'
miRNA:   3'- gugUCGGGCUACCACCUgu-GCCuaua -5'
30222 3' -55.3 NC_006273.1 + 107365 0.67 0.94872
Target:  5'- uGCAGCCCGgcGGUGuuccGGCG-GGGUAa -3'
miRNA:   3'- gUGUCGGGCuaCCAC----CUGUgCCUAUa -5'
30222 3' -55.3 NC_006273.1 + 217036 0.67 0.94872
Target:  5'- gCGCGGUUCGGUGGUGGcgaACGGc--- -3'
miRNA:   3'- -GUGUCGGGCUACCACCug-UGCCuaua -5'
30222 3' -55.3 NC_006273.1 + 171371 0.66 0.963647
Target:  5'- cCGC-GCCC-AUGGUGGcucgagguCACGGAUGc -3'
miRNA:   3'- -GUGuCGGGcUACCACCu-------GUGCCUAUa -5'
30222 3' -55.3 NC_006273.1 + 147516 0.66 0.968066
Target:  5'- gGCGGCCCgcucgcucgggaggcGAUGG-GGGCGCGccGAUGa -3'
miRNA:   3'- gUGUCGGG---------------CUACCaCCUGUGC--CUAUa -5'
30222 3' -55.3 NC_006273.1 + 211275 0.68 0.90617
Target:  5'- uCACAGCCCGAaauggaggccgcguUGGUGGccccggugGCGCGuGAc-- -3'
miRNA:   3'- -GUGUCGGGCU--------------ACCACC--------UGUGC-CUaua -5'
30222 3' -55.3 NC_006273.1 + 28156 0.69 0.888925
Target:  5'- aCACGGUCCG-UGG-GaGACGCGGGUu- -3'
miRNA:   3'- -GUGUCGGGCuACCaC-CUGUGCCUAua -5'
30222 3' -55.3 NC_006273.1 + 41262 0.77 0.482253
Target:  5'- gACGGCCUccgaggGGUGGUGGACACGG-UGUu -3'
miRNA:   3'- gUGUCGGG------CUACCACCUGUGCCuAUA- -5'
30222 3' -55.3 NC_006273.1 + 142799 0.74 0.639558
Target:  5'- aGCAGCCgccguCGcUGGUGGGCACGGGc-- -3'
miRNA:   3'- gUGUCGG-----GCuACCACCUGUGCCUaua -5'
30222 3' -55.3 NC_006273.1 + 162755 0.71 0.757712
Target:  5'- aGCAGUCCGGuggugcuggcggUGGUGGugGCGGcgGc -3'
miRNA:   3'- gUGUCGGGCU------------ACCACCugUGCCuaUa -5'
30222 3' -55.3 NC_006273.1 + 160611 0.7 0.820454
Target:  5'- gGCGGCggUGGUGGUGGugGCGGGa-- -3'
miRNA:   3'- gUGUCGg-GCUACCACCugUGCCUaua -5'
30222 3' -55.3 NC_006273.1 + 105052 0.7 0.837008
Target:  5'- uGCAGCgCGuuaugggccUGGUGGACAUGGAc-- -3'
miRNA:   3'- gUGUCGgGCu--------ACCACCUGUGCCUaua -5'
30222 3' -55.3 NC_006273.1 + 212917 0.7 0.837008
Target:  5'- gCAUAGCCagc--GUGGACACGGGUAc -3'
miRNA:   3'- -GUGUCGGgcuacCACCUGUGCCUAUa -5'
30222 3' -55.3 NC_006273.1 + 119831 0.7 0.845017
Target:  5'- gCACGGCCCaGUGGUGaGCcgugcgGCGGAUGa -3'
miRNA:   3'- -GUGUCGGGcUACCACcUG------UGCCUAUa -5'
30222 3' -55.3 NC_006273.1 + 4586 0.69 0.888925
Target:  5'- gACGGCagCGGUGGUGGcGCugGGGg-- -3'
miRNA:   3'- gUGUCGg-GCUACCACC-UGugCCUaua -5'
30222 3' -55.3 NC_006273.1 + 29129 0.66 0.966845
Target:  5'- ---cGCCCu-UGGUGGAgACGGAg-- -3'
miRNA:   3'- guguCGGGcuACCACCUgUGCCUaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.