miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30222 5' -49.5 NC_006273.1 + 32546 0.66 0.999487
Target:  5'- -gGUGgaaaCAUGACCAGCGUUuggcgguuugAGGGa -3'
miRNA:   3'- caUAUaug-GUACUGGUCGUAG----------UCCCa -5'
30222 5' -49.5 NC_006273.1 + 126992 0.66 0.999041
Target:  5'- cGUGgagACCGcgguggcGGCCGGCAUCAGGa- -3'
miRNA:   3'- -CAUauaUGGUa------CUGGUCGUAGUCCca -5'
30222 5' -49.5 NC_006273.1 + 170551 0.66 0.999041
Target:  5'- ----cUGCCucgAUGGCCAGgcUCAGGGUg -3'
miRNA:   3'- cauauAUGG---UACUGGUCguAGUCCCA- -5'
30222 5' -49.5 NC_006273.1 + 45831 0.67 0.998833
Target:  5'- gGUGUG-GCUGUGGCuCGGCGUCGGGc- -3'
miRNA:   3'- -CAUAUaUGGUACUG-GUCGUAGUCCca -5'
30222 5' -49.5 NC_006273.1 + 71482 0.67 0.998587
Target:  5'- -cGUAUACUugcucagcaugGUGGCCAGCA-CcGGGUg -3'
miRNA:   3'- caUAUAUGG-----------UACUGGUCGUaGuCCCA- -5'
30222 5' -49.5 NC_006273.1 + 168598 0.67 0.998587
Target:  5'- --cUGUACCAaGGCCAGUGUCAGc-- -3'
miRNA:   3'- cauAUAUGGUaCUGGUCGUAGUCcca -5'
30222 5' -49.5 NC_006273.1 + 170692 0.67 0.997444
Target:  5'- -----cACCAUGACCuGuuugggaaacuuuuGCAUCAGGGg -3'
miRNA:   3'- cauauaUGGUACUGG-U--------------CGUAGUCCCa -5'
30222 5' -49.5 NC_006273.1 + 127621 0.68 0.997121
Target:  5'- -cGUGUACCAgcacgucGACCagguAGCAaagcUCGGGGUa -3'
miRNA:   3'- caUAUAUGGUa------CUGG----UCGU----AGUCCCA- -5'
30222 5' -49.5 NC_006273.1 + 166148 0.68 0.997121
Target:  5'- -----cGCgCAUGAUCAGCG-CGGGGUc -3'
miRNA:   3'- cauauaUG-GUACUGGUCGUaGUCCCA- -5'
30222 5' -49.5 NC_006273.1 + 67033 0.68 0.996011
Target:  5'- -----cACCGUGcAUCuGCAUCAGGGc -3'
miRNA:   3'- cauauaUGGUAC-UGGuCGUAGUCCCa -5'
30222 5' -49.5 NC_006273.1 + 155710 0.69 0.992738
Target:  5'- -----gGCCAUGACCAucGCcaagaGUCAGGGc -3'
miRNA:   3'- cauauaUGGUACUGGU--CG-----UAGUCCCa -5'
30222 5' -49.5 NC_006273.1 + 207392 0.7 0.984914
Target:  5'- --cUGUACCAUGACgGGUgcucgacgaacagucGUCGGGGc -3'
miRNA:   3'- cauAUAUGGUACUGgUCG---------------UAGUCCCa -5'
30222 5' -49.5 NC_006273.1 + 159477 0.7 0.983013
Target:  5'- -----gACCAUGGCCcGCAccacggcuagaugguUCAGGGUg -3'
miRNA:   3'- cauauaUGGUACUGGuCGU---------------AGUCCCA- -5'
30222 5' -49.5 NC_006273.1 + 190587 0.74 0.896634
Target:  5'- cUGUGUACCGUGAUgaCAG-AUCAGGGg -3'
miRNA:   3'- cAUAUAUGGUACUG--GUCgUAGUCCCa -5'
30222 5' -49.5 NC_006273.1 + 234885 0.76 0.817924
Target:  5'- gGUGUGUGCCggguGUGGCgGGUguGUCAGGGUg -3'
miRNA:   3'- -CAUAUAUGG----UACUGgUCG--UAGUCCCA- -5'
30222 5' -49.5 NC_006273.1 + 54 0.76 0.817924
Target:  5'- gGUGUGUGCCggguGUGGCgGGUguGUCAGGGUg -3'
miRNA:   3'- -CAUAUAUGG----UACUGgUCG--UAGUCCCA- -5'
30222 5' -49.5 NC_006273.1 + 194947 0.76 0.817924
Target:  5'- gGUGUGUGCCggguGUGGCgGGUguGUCAGGGUg -3'
miRNA:   3'- -CAUAUAUGG----UACUGgUCG--UAGUCCCA- -5'
30222 5' -49.5 NC_006273.1 + 207032 1.07 0.02089
Target:  5'- gGUAUAUACCAUGACCAGCAUCAGGGUc -3'
miRNA:   3'- -CAUAUAUGGUACUGGUCGUAGUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.