miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30223 5' -56.4 NC_006273.1 + 157992 0.66 0.956693
Target:  5'- gGCgucgGAGGCGGUGggcaggaugcgguugUCCucgcacgaagugCAGGCgAUGCg -3'
miRNA:   3'- -CGa---CUCCGCCACa--------------AGG------------GUUCGgUGCG- -5'
30223 5' -56.4 NC_006273.1 + 208263 0.66 0.956325
Target:  5'- -aUGAGGCGG-GUgaugcgCCCGAGUgaACGg -3'
miRNA:   3'- cgACUCCGCCaCAa-----GGGUUCGg-UGCg -5'
30223 5' -56.4 NC_006273.1 + 54206 0.66 0.956325
Target:  5'- aGCguucgGAGGCGGUG--CCaCAGGCugUugGCc -3'
miRNA:   3'- -CGa----CUCCGCCACaaGG-GUUCG--GugCG- -5'
30223 5' -56.4 NC_006273.1 + 70287 0.66 0.952536
Target:  5'- --cGuGGUGGUGg--CCAuacgcaacgaAGCCACGCg -3'
miRNA:   3'- cgaCuCCGCCACaagGGU----------UCGGUGCG- -5'
30223 5' -56.4 NC_006273.1 + 95713 0.66 0.952536
Target:  5'- -gUGAcGGCGcccgUCCCAcaAGCCACGUc -3'
miRNA:   3'- cgACU-CCGCcacaAGGGU--UCGGUGCG- -5'
30223 5' -56.4 NC_006273.1 + 227593 0.66 0.952536
Target:  5'- --gGAcGCGaGUGUUCCauaaAAGCCGgGCg -3'
miRNA:   3'- cgaCUcCGC-CACAAGGg---UUCGGUgCG- -5'
30223 5' -56.4 NC_006273.1 + 127061 0.66 0.948532
Target:  5'- cUUGAGGU--UGagUCCCAGGCCGCa- -3'
miRNA:   3'- cGACUCCGccACa-AGGGUUCGGUGcg -5'
30223 5' -56.4 NC_006273.1 + 61230 0.66 0.946025
Target:  5'- --cGAGGCGGcgGUgcagcagaugcgggCCCAgguccAGCCACuGCa -3'
miRNA:   3'- cgaCUCCGCCa-CAa-------------GGGU-----UCGGUG-CG- -5'
30223 5' -56.4 NC_006273.1 + 71773 0.66 0.94431
Target:  5'- aGCUGucGCGGUacucgCCCGucugacAGCgCGCGCa -3'
miRNA:   3'- -CGACucCGCCAcaa--GGGU------UCG-GUGCG- -5'
30223 5' -56.4 NC_006273.1 + 194145 0.66 0.941671
Target:  5'- cGCUGAGGCGagcugcGUGUgcgugccgucuguguUCCCcguguccGCCGCGa -3'
miRNA:   3'- -CGACUCCGC------CACA---------------AGGGuu-----CGGUGCg -5'
30223 5' -56.4 NC_006273.1 + 171733 0.66 0.939868
Target:  5'- gGUUGAcGGUGGUGUa--CAGGUUAUGCg -3'
miRNA:   3'- -CGACU-CCGCCACAaggGUUCGGUGCG- -5'
30223 5' -56.4 NC_006273.1 + 117237 0.66 0.939868
Target:  5'- gGCUGGGGCGcGcGUUCCCucuucguccCCGuCGCc -3'
miRNA:   3'- -CGACUCCGC-CaCAAGGGuuc------GGU-GCG- -5'
30223 5' -56.4 NC_006273.1 + 56284 0.66 0.939868
Target:  5'- uGCUGGGGCGG-GUacggCCgCGGGuguCCGCGg -3'
miRNA:   3'- -CGACUCCGCCaCAa---GG-GUUC---GGUGCg -5'
30223 5' -56.4 NC_006273.1 + 147808 0.67 0.935204
Target:  5'- uCUGGguGGCGGccgUgCCGAGCCGCGg -3'
miRNA:   3'- cGACU--CCGCCacaAgGGUUCGGUGCg -5'
30223 5' -56.4 NC_006273.1 + 110916 0.67 0.932298
Target:  5'- uGCUGAuGCGGcUGgaCCgCGagcgcagcgucggcgAGCCGCGCa -3'
miRNA:   3'- -CGACUcCGCC-ACaaGG-GU---------------UCGGUGCG- -5'
30223 5' -56.4 NC_006273.1 + 174209 0.67 0.930815
Target:  5'- aCUGGuGGUGGUGggcaucgugcugugCCUAAGUCugGCc -3'
miRNA:   3'- cGACU-CCGCCACaa------------GGGUUCGGugCG- -5'
30223 5' -56.4 NC_006273.1 + 202478 0.67 0.930317
Target:  5'- aGCUGcuGGUGGUGa-CCCAgggucAGUUGCGCg -3'
miRNA:   3'- -CGACu-CCGCCACaaGGGU-----UCGGUGCG- -5'
30223 5' -56.4 NC_006273.1 + 28914 0.67 0.930317
Target:  5'- --cGAGGCagcGGUcUUUgggccagaCCAGGCCACGCg -3'
miRNA:   3'- cgaCUCCG---CCAcAAG--------GGUUCGGUGCG- -5'
30223 5' -56.4 NC_006273.1 + 177099 0.67 0.929816
Target:  5'- aCUGucaguuucuGGCGGUGggUCCCGacgacgaGGUgGCGCa -3'
miRNA:   3'- cGACu--------CCGCCACa-AGGGU-------UCGgUGCG- -5'
30223 5' -56.4 NC_006273.1 + 141037 0.67 0.925205
Target:  5'- uGCUccaGGGCGGUGgga-CGGGCC-CGCg -3'
miRNA:   3'- -CGAc--UCCGCCACaaggGUUCGGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.