miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30224 3' -51.1 NC_006273.1 + 189880 0.66 0.99856
Target:  5'- uCGGGcgGACCGCCGgGcAUcGCCGUc- -3'
miRNA:   3'- -GUUCuaCUGGUGGUgC-UAaCGGCAcu -5'
30224 3' -51.1 NC_006273.1 + 117822 0.66 0.998275
Target:  5'- aAGGAggGGCCGCUACGGc-GCCGgGAu -3'
miRNA:   3'- gUUCUa-CUGGUGGUGCUaaCGGCaCU- -5'
30224 3' -51.1 NC_006273.1 + 140584 0.66 0.998275
Target:  5'- -cGGccGACCGCCGCGAcccccaGCCG-GAa -3'
miRNA:   3'- guUCuaCUGGUGGUGCUaa----CGGCaCU- -5'
30224 3' -51.1 NC_006273.1 + 87882 0.66 0.998275
Target:  5'- gCGAGcgGGCCGCCGCuAUcGCCaUGGc -3'
miRNA:   3'- -GUUCuaCUGGUGGUGcUAaCGGcACU- -5'
30224 3' -51.1 NC_006273.1 + 85366 0.66 0.997944
Target:  5'- -----aGACCuCCACGcaaGCCGUGAg -3'
miRNA:   3'- guucuaCUGGuGGUGCuaaCGGCACU- -5'
30224 3' -51.1 NC_006273.1 + 214552 0.66 0.997561
Target:  5'- gAAGAUGGCCGCCGucaGGUguugGCCa--- -3'
miRNA:   3'- gUUCUACUGGUGGUg--CUAa---CGGcacu -5'
30224 3' -51.1 NC_006273.1 + 73900 0.66 0.997561
Target:  5'- aGAGAUgGACCACUGCc---GCUGUGAc -3'
miRNA:   3'- gUUCUA-CUGGUGGUGcuaaCGGCACU- -5'
30224 3' -51.1 NC_006273.1 + 167174 0.66 0.997561
Target:  5'- --uGGUGGCCACgGCGGgcgcagcgGCCGcgGAg -3'
miRNA:   3'- guuCUACUGGUGgUGCUaa------CGGCa-CU- -5'
30224 3' -51.1 NC_006273.1 + 61728 0.66 0.997561
Target:  5'- -uGGAUGcCCaggacgugACCGCGAgcGCCGUGc -3'
miRNA:   3'- guUCUACuGG--------UGGUGCUaaCGGCACu -5'
30224 3' -51.1 NC_006273.1 + 146815 0.67 0.996041
Target:  5'- ---cAUGGCCGCCACuGUgGCgCGUGAa -3'
miRNA:   3'- guucUACUGGUGGUGcUAaCG-GCACU- -5'
30224 3' -51.1 NC_006273.1 + 95310 0.67 0.995388
Target:  5'- --cGGUGgGCCGCCAUGAcaccucaaUUGCCGUc- -3'
miRNA:   3'- guuCUAC-UGGUGGUGCU--------AACGGCAcu -5'
30224 3' -51.1 NC_006273.1 + 214006 0.67 0.99465
Target:  5'- gAAGAUGcagGCCACCuccagACGGUcGCCGUa- -3'
miRNA:   3'- gUUCUAC---UGGUGG-----UGCUAaCGGCAcu -5'
30224 3' -51.1 NC_006273.1 + 204236 0.67 0.99465
Target:  5'- --uGAUGAUCACCGCG--UG-CGUGAu -3'
miRNA:   3'- guuCUACUGGUGGUGCuaACgGCACU- -5'
30224 3' -51.1 NC_006273.1 + 113737 0.67 0.993819
Target:  5'- gGAGGUGGCgACgGCGGcggcGCCGUGc -3'
miRNA:   3'- gUUCUACUGgUGgUGCUaa--CGGCACu -5'
30224 3' -51.1 NC_006273.1 + 32646 0.68 0.992172
Target:  5'- -cGGAUGACCuggccgucggcgucGCgucgcaggcccgaGCGGUUGCCGUGAc -3'
miRNA:   3'- guUCUACUGG--------------UGg------------UGCUAACGGCACU- -5'
30224 3' -51.1 NC_006273.1 + 138887 0.68 0.991848
Target:  5'- gGGGAUGAUgaACCAagucUUGCCGUGAc -3'
miRNA:   3'- gUUCUACUGg-UGGUgcu-AACGGCACU- -5'
30224 3' -51.1 NC_006273.1 + 75258 0.68 0.990691
Target:  5'- gAAGcgcUGGCCGCCGCGGcgGCCGc-- -3'
miRNA:   3'- gUUCu--ACUGGUGGUGCUaaCGGCacu -5'
30224 3' -51.1 NC_006273.1 + 69496 0.68 0.989409
Target:  5'- ------aGCCAUCACGGUaGCCGUGGc -3'
miRNA:   3'- guucuacUGGUGGUGCUAaCGGCACU- -5'
30224 3' -51.1 NC_006273.1 + 111681 0.68 0.989409
Target:  5'- gAGGAUGACCGCaACGAcgaUCGUGAa -3'
miRNA:   3'- gUUCUACUGGUGgUGCUaacGGCACU- -5'
30224 3' -51.1 NC_006273.1 + 85938 0.68 0.989409
Target:  5'- gGAGcgGACUACCACcggcgccgccGUUGCCGUaGAa -3'
miRNA:   3'- gUUCuaCUGGUGGUGc---------UAACGGCA-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.