miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30224 5' -48.2 NC_006273.1 + 82268 0.66 0.999913
Target:  5'- gGAUCAAGGCGucgucguacuUGGGcgugGGCCGCGGc-- -3'
miRNA:   3'- -CUAGUUUCGU----------ACCUa---CUGGUGCUaga -5'
30224 5' -48.2 NC_006273.1 + 61716 0.66 0.999913
Target:  5'- aGAUCGgcGCgGUGGAugcccaggacgUGACCGCGAg-- -3'
miRNA:   3'- -CUAGUuuCG-UACCU-----------ACUGGUGCUaga -5'
30224 5' -48.2 NC_006273.1 + 167249 0.66 0.999853
Target:  5'- cGAUCAugggcGGCGUGG-UGACCgugGCGGUg- -3'
miRNA:   3'- -CUAGUu----UCGUACCuACUGG---UGCUAga -5'
30224 5' -48.2 NC_006273.1 + 144403 0.67 0.999811
Target:  5'- cGGUCAGcugauuccauGCGUGGAggaggcGACCACGGUg- -3'
miRNA:   3'- -CUAGUUu---------CGUACCUa-----CUGGUGCUAga -5'
30224 5' -48.2 NC_006273.1 + 9713 0.67 0.999759
Target:  5'- --aUAAAGUGUGGaAUGGCgAUGAUCa -3'
miRNA:   3'- cuaGUUUCGUACC-UACUGgUGCUAGa -5'
30224 5' -48.2 NC_006273.1 + 199947 0.67 0.999759
Target:  5'- aGAUUAuugaacGAGCGUGGAU-ACCACGccAUCg -3'
miRNA:   3'- -CUAGU------UUCGUACCUAcUGGUGC--UAGa -5'
30224 5' -48.2 NC_006273.1 + 163904 0.67 0.999519
Target:  5'- cGAUCccAGCGaGGA-GGCUGCGAUCg -3'
miRNA:   3'- -CUAGuuUCGUaCCUaCUGGUGCUAGa -5'
30224 5' -48.2 NC_006273.1 + 138982 0.68 0.999095
Target:  5'- cGAUCuggAAGGCGUGGAUGagguacugcaGCaCGCGAUUg -3'
miRNA:   3'- -CUAG---UUUCGUACCUAC----------UG-GUGCUAGa -5'
30224 5' -48.2 NC_006273.1 + 231202 0.68 0.999095
Target:  5'- cGAUCcu--CAUGGcgagGACCGCGAUCUc -3'
miRNA:   3'- -CUAGuuucGUACCua--CUGGUGCUAGA- -5'
30224 5' -48.2 NC_006273.1 + 24063 0.69 0.997248
Target:  5'- -cUCAucGCuUGGAUGACCugGuuAUCg -3'
miRNA:   3'- cuAGUuuCGuACCUACUGGugC--UAGa -5'
30224 5' -48.2 NC_006273.1 + 39266 0.69 0.996746
Target:  5'- ------cGCGUGGAccaucUGACCugGAUCa -3'
miRNA:   3'- cuaguuuCGUACCU-----ACUGGugCUAGa -5'
30224 5' -48.2 NC_006273.1 + 214537 0.69 0.996746
Target:  5'- -uUCAGAGCAcauuUGGAagaUGGCCGCcGUCa -3'
miRNA:   3'- cuAGUUUCGU----ACCU---ACUGGUGcUAGa -5'
30224 5' -48.2 NC_006273.1 + 211698 0.69 0.996582
Target:  5'- aGGUCAccagcguagaggagGAGCA-GGcgcUGGCCACGAUCa -3'
miRNA:   3'- -CUAGU--------------UUCGUaCCu--ACUGGUGCUAGa -5'
30224 5' -48.2 NC_006273.1 + 207549 0.7 0.996172
Target:  5'- --cCAGAGguUGGGacUGAgCACGAUCa -3'
miRNA:   3'- cuaGUUUCguACCU--ACUgGUGCUAGa -5'
30224 5' -48.2 NC_006273.1 + 129815 0.74 0.96003
Target:  5'- gGGagGAGGUAUGG-UGACCAUGGUCg -3'
miRNA:   3'- -CUagUUUCGUACCuACUGGUGCUAGa -5'
30224 5' -48.2 NC_006273.1 + 206942 0.74 0.947821
Target:  5'- --gCAGAGCAUGGAUGacaggacauagGCCugGAUUa -3'
miRNA:   3'- cuaGUUUCGUACCUAC-----------UGGugCUAGa -5'
30224 5' -48.2 NC_006273.1 + 174836 0.76 0.890738
Target:  5'- aGGUCAAaacAGCGUGGAUGGCgucuccagGCGAUCUg -3'
miRNA:   3'- -CUAGUU---UCGUACCUACUGg-------UGCUAGA- -5'
30224 5' -48.2 NC_006273.1 + 209583 1.09 0.023099
Target:  5'- uGAUCAAAGCAUGGAUGACCACGAUCUg -3'
miRNA:   3'- -CUAGUUUCGUACCUACUGGUGCUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.