miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30225 5' -56.9 NC_006273.1 + 213564 0.66 0.928516
Target:  5'- -uAGCGCAGACagagaCAggaccGACGguagccacagccGCCGGAGa -3'
miRNA:   3'- uuUCGCGUCUGg----GUa----CUGU------------CGGCCUC- -5'
30225 5' -56.9 NC_006273.1 + 194478 0.66 0.928516
Target:  5'- cGAGCGCAGA-CgGUGACGucgacGCCGGu- -3'
miRNA:   3'- uUUCGCGUCUgGgUACUGU-----CGGCCuc -5'
30225 5' -56.9 NC_006273.1 + 215412 0.66 0.923248
Target:  5'- gGAAGC-CuGACgCCGUGACAGCCa--- -3'
miRNA:   3'- -UUUCGcGuCUG-GGUACUGUCGGccuc -5'
30225 5' -56.9 NC_006273.1 + 15651 0.66 0.923248
Target:  5'- ----gGCAuucACCUAUGGCAGCUGGGGc -3'
miRNA:   3'- uuucgCGUc--UGGGUACUGUCGGCCUC- -5'
30225 5' -56.9 NC_006273.1 + 101632 0.66 0.923248
Target:  5'- uGAGUGCAGcUCCAUGGCcGCCGu-- -3'
miRNA:   3'- uUUCGCGUCuGGGUACUGuCGGCcuc -5'
30225 5' -56.9 NC_006273.1 + 197405 0.66 0.923248
Target:  5'- uGGGCGCGcGAgCCGcacgGGCAGUgGGAGu -3'
miRNA:   3'- uUUCGCGU-CUgGGUa---CUGUCGgCCUC- -5'
30225 5' -56.9 NC_006273.1 + 41656 0.66 0.923248
Target:  5'- uGAAaCGCGGAUCU-UGACGGuuGGGGg -3'
miRNA:   3'- -UUUcGCGUCUGGGuACUGUCggCCUC- -5'
30225 5' -56.9 NC_006273.1 + 132545 0.66 0.923248
Target:  5'- -cAGCGU--GCCCGUGgacGCGGCCGGc- -3'
miRNA:   3'- uuUCGCGucUGGGUAC---UGUCGGCCuc -5'
30225 5' -56.9 NC_006273.1 + 203927 0.66 0.91775
Target:  5'- gGAGGCGCAGccaccGCCuCAUGGCGGCUu--- -3'
miRNA:   3'- -UUUCGCGUC-----UGG-GUACUGUCGGccuc -5'
30225 5' -56.9 NC_006273.1 + 141072 0.66 0.91775
Target:  5'- -cGGCGcCGGGCCU----CGGCCGGGGa -3'
miRNA:   3'- uuUCGC-GUCUGGGuacuGUCGGCCUC- -5'
30225 5' -56.9 NC_006273.1 + 2902 0.66 0.91775
Target:  5'- -uGGCGCGGugUCGUGACA---GGAGa -3'
miRNA:   3'- uuUCGCGUCugGGUACUGUcggCCUC- -5'
30225 5' -56.9 NC_006273.1 + 156350 0.66 0.914341
Target:  5'- --cGCGUGGGCCCAgccuggcgcacuacgUGACGGCUugucuuuuuguGGAGc -3'
miRNA:   3'- uuuCGCGUCUGGGU---------------ACUGUCGG-----------CCUC- -5'
30225 5' -56.9 NC_006273.1 + 93933 0.66 0.912023
Target:  5'- --uGCGCGGGCCag-GACccGCgGGAGg -3'
miRNA:   3'- uuuCGCGUCUGGguaCUGu-CGgCCUC- -5'
30225 5' -56.9 NC_006273.1 + 162205 0.66 0.912023
Target:  5'- -cGGcCGCGGugCgcUG-CAGCCGGAGg -3'
miRNA:   3'- uuUC-GCGUCugGguACuGUCGGCCUC- -5'
30225 5' -56.9 NC_006273.1 + 53833 0.66 0.906067
Target:  5'- -uAGUGUuacaucgauacAGugCCGUGACAGCCGuGGc -3'
miRNA:   3'- uuUCGCG-----------UCugGGUACUGUCGGC-CUc -5'
30225 5' -56.9 NC_006273.1 + 133485 0.66 0.899885
Target:  5'- cAGGCGCGGACgCuggcGGCGGcCCGGGc -3'
miRNA:   3'- uUUCGCGUCUGgGua--CUGUC-GGCCUc -5'
30225 5' -56.9 NC_006273.1 + 116706 0.66 0.899885
Target:  5'- --cGCGCGGGCCCGUcaguccgcuGCAGCCaGAc -3'
miRNA:   3'- uuuCGCGUCUGGGUAc--------UGUCGGcCUc -5'
30225 5' -56.9 NC_006273.1 + 145598 0.67 0.893479
Target:  5'- uGAGCGgGGGCCCGagcGACGGuCUGGGc -3'
miRNA:   3'- uUUCGCgUCUGGGUa--CUGUC-GGCCUc -5'
30225 5' -56.9 NC_006273.1 + 73701 0.67 0.886852
Target:  5'- uGGAGCG-AGugCCGccGCAGCCGGcAGa -3'
miRNA:   3'- -UUUCGCgUCugGGUacUGUCGGCC-UC- -5'
30225 5' -56.9 NC_006273.1 + 188509 0.67 0.880009
Target:  5'- -cAGCGCGucgcGuACCCGguGCAGCCGGAc -3'
miRNA:   3'- uuUCGCGU----C-UGGGUacUGUCGGCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.