miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30226 5' -61 NC_006273.1 + 87525 0.66 0.8087
Target:  5'- -uUGCCa-GCGCGGCgGCGGUcuCUGUc -3'
miRNA:   3'- ccACGGgaCGUGCCGgUGCCAc-GACA- -5'
30226 5' -61 NC_006273.1 + 195814 0.66 0.800314
Target:  5'- --cGCCCcucgGuCGCGGCCGCGGgGCcGg -3'
miRNA:   3'- ccaCGGGa---C-GUGCCGGUGCCaCGaCa -5'
30226 5' -61 NC_006273.1 + 48830 0.66 0.800314
Target:  5'- aGG-GCCUgaaGCuccuGCGGCCACaGGUGCg-- -3'
miRNA:   3'- -CCaCGGGa--CG----UGCCGGUG-CCACGaca -5'
30226 5' -61 NC_006273.1 + 202557 0.66 0.800314
Target:  5'- cGUGgCCgGCgugGCGGCCgACGGcagcgUGCUGUg -3'
miRNA:   3'- cCACgGGaCG---UGCCGG-UGCC-----ACGACA- -5'
30226 5' -61 NC_006273.1 + 147969 0.66 0.800314
Target:  5'- --cGCCCgagGCggaggagccgGCGGCgGCGGUGgUGg -3'
miRNA:   3'- ccaCGGGa--CG----------UGCCGgUGCCACgACa -5'
30226 5' -61 NC_006273.1 + 922 0.66 0.800314
Target:  5'- --cGCCCcucgGuCGCGGCCGCGGgGCcGg -3'
miRNA:   3'- ccaCGGGa---C-GUGCCGGUGCCaCGaCa -5'
30226 5' -61 NC_006273.1 + 101264 0.66 0.791792
Target:  5'- aGGUaGCCaucgccgagUGCGCGGCgCAcaugaucaucuCGGUGCUGa -3'
miRNA:   3'- -CCA-CGGg--------ACGUGCCG-GU-----------GCCACGACa -5'
30226 5' -61 NC_006273.1 + 210973 0.66 0.791792
Target:  5'- --aGCCCaGCACGGCCaccACGGccGCUu- -3'
miRNA:   3'- ccaCGGGaCGUGCCGG---UGCCa-CGAca -5'
30226 5' -61 NC_006273.1 + 129974 0.66 0.791792
Target:  5'- gGGcUGCUgCUGCACgGGCUcgaccgGCGGcUGCUGUu -3'
miRNA:   3'- -CC-ACGG-GACGUG-CCGG------UGCC-ACGACA- -5'
30226 5' -61 NC_006273.1 + 156708 0.66 0.790933
Target:  5'- cGGUGCCC-GCGgacccCGGCCccuucucgcgugcGCGGUGUg-- -3'
miRNA:   3'- -CCACGGGaCGU-----GCCGG-------------UGCCACGaca -5'
30226 5' -61 NC_006273.1 + 144623 0.66 0.783142
Target:  5'- uGGUGUCaaucgCUGCGCuucucggaGCCGCGuGUGCUGa -3'
miRNA:   3'- -CCACGG-----GACGUGc-------CGGUGC-CACGACa -5'
30226 5' -61 NC_006273.1 + 31469 0.66 0.783142
Target:  5'- cGGUGgC-UGCGCcuccucgucGGCCugGGcUGCUGUu -3'
miRNA:   3'- -CCACgGgACGUG---------CCGGugCC-ACGACA- -5'
30226 5' -61 NC_006273.1 + 217568 0.66 0.77437
Target:  5'- aGGUGCCCcagGCuuCGGCgGCGGcuuUGgUGa -3'
miRNA:   3'- -CCACGGGa--CGu-GCCGgUGCC---ACgACa -5'
30226 5' -61 NC_006273.1 + 135227 0.67 0.756495
Target:  5'- aGGcGCCCUGCAguGCCACGaGUGUc-- -3'
miRNA:   3'- -CCaCGGGACGUgcCGGUGC-CACGaca -5'
30226 5' -61 NC_006273.1 + 87687 0.67 0.756495
Target:  5'- -uUGCggUCUGaaaaGCGGCCACGGggGCUGc -3'
miRNA:   3'- ccACG--GGACg---UGCCGGUGCCa-CGACa -5'
30226 5' -61 NC_006273.1 + 162190 0.67 0.738227
Target:  5'- uGUGCagCUGgugauCGGCCGCGGUGCg-- -3'
miRNA:   3'- cCACGg-GACgu---GCCGGUGCCACGaca -5'
30226 5' -61 NC_006273.1 + 161677 0.67 0.738227
Target:  5'- cGGcGCUCUGC-CGGCUGCGGcgGCa-- -3'
miRNA:   3'- -CCaCGGGACGuGCCGGUGCCa-CGaca -5'
30226 5' -61 NC_006273.1 + 38620 0.67 0.735457
Target:  5'- aGGUGCCgacGCACGGCCgucagcagcgacgcGgGGUGCg-- -3'
miRNA:   3'- -CCACGGga-CGUGCCGG--------------UgCCACGaca -5'
30226 5' -61 NC_006273.1 + 232894 0.67 0.728966
Target:  5'- --cGCCCacaGCGCGGCgCGCgGGUGCagGUg -3'
miRNA:   3'- ccaCGGGa--CGUGCCG-GUG-CCACGa-CA- -5'
30226 5' -61 NC_006273.1 + 72861 0.67 0.728966
Target:  5'- --gGCCaucgUGCggACGGCCACGGUGUg-- -3'
miRNA:   3'- ccaCGGg---ACG--UGCCGGUGCCACGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.