miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30226 5' -61 NC_006273.1 + 211953 1.09 0.00152
Target:  5'- aGGUGCCCUGCACGGCCACGGUGCUGUa -3'
miRNA:   3'- -CCACGGGACGUGCCGGUGCCACGACA- -5'
30226 5' -61 NC_006273.1 + 131838 0.77 0.2364
Target:  5'- --aGCCC-GCACGGCCugGG-GCUGg -3'
miRNA:   3'- ccaCGGGaCGUGCCGGugCCaCGACa -5'
30226 5' -61 NC_006273.1 + 141010 0.75 0.315843
Target:  5'- cGGUGCCCgGCccACGGCCccggAUGGUGCUc- -3'
miRNA:   3'- -CCACGGGaCG--UGCCGG----UGCCACGAca -5'
30226 5' -61 NC_006273.1 + 165038 0.74 0.344034
Target:  5'- -aUGCCCUcggGCGCGGCaGCGGUGCUc- -3'
miRNA:   3'- ccACGGGA---CGUGCCGgUGCCACGAca -5'
30226 5' -61 NC_006273.1 + 208416 0.74 0.366338
Target:  5'- aGGUGCCCaGCuuGGCCA-GGUaGCUGa -3'
miRNA:   3'- -CCACGGGaCGugCCGGUgCCA-CGACa -5'
30226 5' -61 NC_006273.1 + 101882 0.73 0.377082
Target:  5'- cGGUGCgcaggucgaugaacaCCUGCACGGUCucuugcggguuGCGGUGCgUGUa -3'
miRNA:   3'- -CCACG---------------GGACGUGCCGG-----------UGCCACG-ACA- -5'
30226 5' -61 NC_006273.1 + 184418 0.73 0.381751
Target:  5'- cGGUGUCUaUGU-CGGCCgGCGGUGCUGg -3'
miRNA:   3'- -CCACGGG-ACGuGCCGG-UGCCACGACa -5'
30226 5' -61 NC_006273.1 + 144438 0.73 0.389618
Target:  5'- cGGUGCgaCUGCACGGCggcgagGCGGUGCg-- -3'
miRNA:   3'- -CCACGg-GACGUGCCGg-----UGCCACGaca -5'
30226 5' -61 NC_006273.1 + 30668 0.73 0.39759
Target:  5'- cGGgcgGCuuCCUGCGgcCGGCCGCGGUGCcGg -3'
miRNA:   3'- -CCa--CG--GGACGU--GCCGGUGCCACGaCa -5'
30226 5' -61 NC_006273.1 + 23467 0.73 0.405667
Target:  5'- -uUGCUCUGuCugGGCC-UGGUGCUGg -3'
miRNA:   3'- ccACGGGAC-GugCCGGuGCCACGACa -5'
30226 5' -61 NC_006273.1 + 142827 0.72 0.438127
Target:  5'- cGUGCaccgcggUCUGCucACGGCCACGGgcUGCUGUc -3'
miRNA:   3'- cCACG-------GGACG--UGCCGGUGCC--ACGACA- -5'
30226 5' -61 NC_006273.1 + 192351 0.72 0.438979
Target:  5'- aGGUGCgUUGCGCGGCCGUGGcGCg-- -3'
miRNA:   3'- -CCACGgGACGUGCCGGUGCCaCGaca -5'
30226 5' -61 NC_006273.1 + 192242 0.71 0.509952
Target:  5'- --cG-CCUGCAcCGGCgUACGGUGCUGUu -3'
miRNA:   3'- ccaCgGGACGU-GCCG-GUGCCACGACA- -5'
30226 5' -61 NC_006273.1 + 67368 0.7 0.526596
Target:  5'- cGGUGCCCUacuucaagcagugGUAgGGCCcgaaacgagaggaGCGGcUGCUGUg -3'
miRNA:   3'- -CCACGGGA-------------CGUgCCGG-------------UGCC-ACGACA- -5'
30226 5' -61 NC_006273.1 + 158633 0.7 0.566163
Target:  5'- aGGUGUCCgaagaGCACGGCCucguuggugacGCGGaUGUUGc -3'
miRNA:   3'- -CCACGGGa----CGUGCCGG-----------UGCC-ACGACa -5'
30226 5' -61 NC_006273.1 + 70659 0.69 0.604523
Target:  5'- cGGUGCUgCUGCGCgacacgguGGCgGCGGUGgaGg -3'
miRNA:   3'- -CCACGG-GACGUG--------CCGgUGCCACgaCa -5'
30226 5' -61 NC_006273.1 + 152620 0.69 0.604523
Target:  5'- cGGUgGCCCgcUGCACGGCCGCGcGUa---- -3'
miRNA:   3'- -CCA-CGGG--ACGUGCCGGUGC-CAcgaca -5'
30226 5' -61 NC_006273.1 + 16256 0.69 0.614173
Target:  5'- uGGUGCUCUGCAUgGGUgGCGGUacGCg-- -3'
miRNA:   3'- -CCACGGGACGUG-CCGgUGCCA--CGaca -5'
30226 5' -61 NC_006273.1 + 121591 0.69 0.614173
Target:  5'- uGGaGCUCUGCGCgaacauguagucGGCCACGGgguugcucuUGCUGa -3'
miRNA:   3'- -CCaCGGGACGUG------------CCGGUGCC---------ACGACa -5'
30226 5' -61 NC_006273.1 + 168352 0.69 0.623836
Target:  5'- uGGUcGCCCUGaUGCaGaugCACGGUGCUGUu -3'
miRNA:   3'- -CCA-CGGGAC-GUGcCg--GUGCCACGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.