miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30226 5' -61 NC_006273.1 + 38001 0.67 0.728966
Target:  5'- --cGCCCacaGCGCGGCgCGCgGGUGCagGUg -3'
miRNA:   3'- ccaCGGGa--CGUGCCG-GUG-CCACGa-CA- -5'
30226 5' -61 NC_006273.1 + 233513 0.67 0.728036
Target:  5'- aGGUGCCgacGCACGGCCguagcagcgacgcGgGGUGCg-- -3'
miRNA:   3'- -CCACGGga-CGUGCCGG-------------UgCCACGaca -5'
30226 5' -61 NC_006273.1 + 183389 0.67 0.71963
Target:  5'- uGGcGCCCaGCAUGGCgcaguucuggCACGGUGCc-- -3'
miRNA:   3'- -CCaCGGGaCGUGCCG----------GUGCCACGaca -5'
30226 5' -61 NC_006273.1 + 142587 0.67 0.710227
Target:  5'- --cGCCUcGC-CGGCCACGGgGUUGa -3'
miRNA:   3'- ccaCGGGaCGuGCCGGUGCCaCGACa -5'
30226 5' -61 NC_006273.1 + 163504 0.68 0.704556
Target:  5'- -cUGCCCUGCGCGGCacgcaccugcgacucCACuGUGgUGg -3'
miRNA:   3'- ccACGGGACGUGCCG---------------GUGcCACgACa -5'
30226 5' -61 NC_006273.1 + 65573 0.68 0.700765
Target:  5'- aGGgGCCCUGC-CGGCCcUGGgccGCUa- -3'
miRNA:   3'- -CCaCGGGACGuGCCGGuGCCa--CGAca -5'
30226 5' -61 NC_006273.1 + 24421 0.68 0.691251
Target:  5'- uGGUgGCCgUGCugGG-CugGGUGCa-- -3'
miRNA:   3'- -CCA-CGGgACGugCCgGugCCACGaca -5'
30226 5' -61 NC_006273.1 + 148597 0.68 0.6721
Target:  5'- cGUGCCCgucuaCGCGGuCCACGGU-CUGc -3'
miRNA:   3'- cCACGGGac---GUGCC-GGUGCCAcGACa -5'
30226 5' -61 NC_006273.1 + 28302 0.68 0.662476
Target:  5'- uGUGCUCUGCGuuGCCACGcGUacugGCUGg -3'
miRNA:   3'- cCACGGGACGUgcCGGUGC-CA----CGACa -5'
30226 5' -61 NC_006273.1 + 81748 0.68 0.662476
Target:  5'- --aGCCCUGCGCGGagcCGG-GCUGc -3'
miRNA:   3'- ccaCGGGACGUGCCgguGCCaCGACa -5'
30226 5' -61 NC_006273.1 + 111324 0.68 0.662476
Target:  5'- gGGgagGCCUggccgcauaGCGCGGCCGCGccGCUGg -3'
miRNA:   3'- -CCa--CGGGa--------CGUGCCGGUGCcaCGACa -5'
30226 5' -61 NC_006273.1 + 174194 0.68 0.662476
Target:  5'- --gGCCUUGUGCGGCaCACuGGUGgUGg -3'
miRNA:   3'- ccaCGGGACGUGCCG-GUG-CCACgACa -5'
30226 5' -61 NC_006273.1 + 18660 0.68 0.652831
Target:  5'- uGUGCCCa--GCGG-CAUGGUGCUGc -3'
miRNA:   3'- cCACGGGacgUGCCgGUGCCACGACa -5'
30226 5' -61 NC_006273.1 + 168352 0.69 0.623836
Target:  5'- uGGUcGCCCUGaUGCaGaugCACGGUGCUGUu -3'
miRNA:   3'- -CCA-CGGGAC-GUGcCg--GUGCCACGACA- -5'
30226 5' -61 NC_006273.1 + 16256 0.69 0.614173
Target:  5'- uGGUGCUCUGCAUgGGUgGCGGUacGCg-- -3'
miRNA:   3'- -CCACGGGACGUG-CCGgUGCCA--CGaca -5'
30226 5' -61 NC_006273.1 + 121591 0.69 0.614173
Target:  5'- uGGaGCUCUGCGCgaacauguagucGGCCACGGgguugcucuUGCUGa -3'
miRNA:   3'- -CCaCGGGACGUG------------CCGGUGCC---------ACGACa -5'
30226 5' -61 NC_006273.1 + 152620 0.69 0.604523
Target:  5'- cGGUgGCCCgcUGCACGGCCGCGcGUa---- -3'
miRNA:   3'- -CCA-CGGG--ACGUGCCGGUGC-CAcgaca -5'
30226 5' -61 NC_006273.1 + 70659 0.69 0.604523
Target:  5'- cGGUGCUgCUGCGCgacacgguGGCgGCGGUGgaGg -3'
miRNA:   3'- -CCACGG-GACGUG--------CCGgUGCCACgaCa -5'
30226 5' -61 NC_006273.1 + 158633 0.7 0.566163
Target:  5'- aGGUGUCCgaagaGCACGGCCucguuggugacGCGGaUGUUGc -3'
miRNA:   3'- -CCACGGGa----CGUGCCGG-----------UGCC-ACGACa -5'
30226 5' -61 NC_006273.1 + 67368 0.7 0.526596
Target:  5'- cGGUGCCCUacuucaagcagugGUAgGGCCcgaaacgagaggaGCGGcUGCUGUg -3'
miRNA:   3'- -CCACGGGA-------------CGUgCCGG-------------UGCC-ACGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.