miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30226 5' -61 NC_006273.1 + 922 0.66 0.800314
Target:  5'- --cGCCCcucgGuCGCGGCCGCGGgGCcGg -3'
miRNA:   3'- ccaCGGGa---C-GUGCCGGUGCCaCGaCa -5'
30226 5' -61 NC_006273.1 + 16256 0.69 0.614173
Target:  5'- uGGUGCUCUGCAUgGGUgGCGGUacGCg-- -3'
miRNA:   3'- -CCACGGGACGUG-CCGgUGCCA--CGaca -5'
30226 5' -61 NC_006273.1 + 18660 0.68 0.652831
Target:  5'- uGUGCCCa--GCGG-CAUGGUGCUGc -3'
miRNA:   3'- cCACGGGacgUGCCgGUGCCACGACa -5'
30226 5' -61 NC_006273.1 + 23467 0.73 0.405667
Target:  5'- -uUGCUCUGuCugGGCC-UGGUGCUGg -3'
miRNA:   3'- ccACGGGAC-GugCCGGuGCCACGACa -5'
30226 5' -61 NC_006273.1 + 24421 0.68 0.691251
Target:  5'- uGGUgGCCgUGCugGG-CugGGUGCa-- -3'
miRNA:   3'- -CCA-CGGgACGugCCgGugCCACGaca -5'
30226 5' -61 NC_006273.1 + 28302 0.68 0.662476
Target:  5'- uGUGCUCUGCGuuGCCACGcGUacugGCUGg -3'
miRNA:   3'- cCACGGGACGUgcCGGUGC-CA----CGACa -5'
30226 5' -61 NC_006273.1 + 30668 0.73 0.39759
Target:  5'- cGGgcgGCuuCCUGCGgcCGGCCGCGGUGCcGg -3'
miRNA:   3'- -CCa--CG--GGACGU--GCCGGUGCCACGaCa -5'
30226 5' -61 NC_006273.1 + 31469 0.66 0.783142
Target:  5'- cGGUGgC-UGCGCcuccucgucGGCCugGGcUGCUGUu -3'
miRNA:   3'- -CCACgGgACGUG---------CCGGugCC-ACGACA- -5'
30226 5' -61 NC_006273.1 + 38001 0.67 0.728966
Target:  5'- --cGCCCacaGCGCGGCgCGCgGGUGCagGUg -3'
miRNA:   3'- ccaCGGGa--CGUGCCG-GUG-CCACGa-CA- -5'
30226 5' -61 NC_006273.1 + 38620 0.67 0.735457
Target:  5'- aGGUGCCgacGCACGGCCgucagcagcgacgcGgGGUGCg-- -3'
miRNA:   3'- -CCACGGga-CGUGCCGG--------------UgCCACGaca -5'
30226 5' -61 NC_006273.1 + 48830 0.66 0.800314
Target:  5'- aGG-GCCUgaaGCuccuGCGGCCACaGGUGCg-- -3'
miRNA:   3'- -CCaCGGGa--CG----UGCCGGUG-CCACGaca -5'
30226 5' -61 NC_006273.1 + 65573 0.68 0.700765
Target:  5'- aGGgGCCCUGC-CGGCCcUGGgccGCUa- -3'
miRNA:   3'- -CCaCGGGACGuGCCGGuGCCa--CGAca -5'
30226 5' -61 NC_006273.1 + 67368 0.7 0.526596
Target:  5'- cGGUGCCCUacuucaagcagugGUAgGGCCcgaaacgagaggaGCGGcUGCUGUg -3'
miRNA:   3'- -CCACGGGA-------------CGUgCCGG-------------UGCC-ACGACA- -5'
30226 5' -61 NC_006273.1 + 70659 0.69 0.604523
Target:  5'- cGGUGCUgCUGCGCgacacgguGGCgGCGGUGgaGg -3'
miRNA:   3'- -CCACGG-GACGUG--------CCGgUGCCACgaCa -5'
30226 5' -61 NC_006273.1 + 72861 0.67 0.728966
Target:  5'- --gGCCaucgUGCggACGGCCACGGUGUg-- -3'
miRNA:   3'- ccaCGGg---ACG--UGCCGGUGCCACGaca -5'
30226 5' -61 NC_006273.1 + 81748 0.68 0.662476
Target:  5'- --aGCCCUGCGCGGagcCGG-GCUGc -3'
miRNA:   3'- ccaCGGGACGUGCCgguGCCaCGACa -5'
30226 5' -61 NC_006273.1 + 87525 0.66 0.8087
Target:  5'- -uUGCCa-GCGCGGCgGCGGUcuCUGUc -3'
miRNA:   3'- ccACGGgaCGUGCCGgUGCCAc-GACA- -5'
30226 5' -61 NC_006273.1 + 87687 0.67 0.756495
Target:  5'- -uUGCggUCUGaaaaGCGGCCACGGggGCUGc -3'
miRNA:   3'- ccACG--GGACg---UGCCGGUGCCa-CGACa -5'
30226 5' -61 NC_006273.1 + 101264 0.66 0.791792
Target:  5'- aGGUaGCCaucgccgagUGCGCGGCgCAcaugaucaucuCGGUGCUGa -3'
miRNA:   3'- -CCA-CGGg--------ACGUGCCG-GU-----------GCCACGACa -5'
30226 5' -61 NC_006273.1 + 101882 0.73 0.377082
Target:  5'- cGGUGCgcaggucgaugaacaCCUGCACGGUCucuugcggguuGCGGUGCgUGUa -3'
miRNA:   3'- -CCACG---------------GGACGUGCCGG-----------UGCCACG-ACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.