miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30226 5' -61 NC_006273.1 + 210973 0.66 0.791792
Target:  5'- --aGCCCaGCACGGCCaccACGGccGCUu- -3'
miRNA:   3'- ccaCGGGaCGUGCCGG---UGCCa-CGAca -5'
30226 5' -61 NC_006273.1 + 65573 0.68 0.700765
Target:  5'- aGGgGCCCUGC-CGGCCcUGGgccGCUa- -3'
miRNA:   3'- -CCaCGGGACGuGCCGGuGCCa--CGAca -5'
30226 5' -61 NC_006273.1 + 233513 0.67 0.728036
Target:  5'- aGGUGCCgacGCACGGCCguagcagcgacgcGgGGUGCg-- -3'
miRNA:   3'- -CCACGGga-CGUGCCGG-------------UgCCACGaca -5'
30226 5' -61 NC_006273.1 + 72861 0.67 0.728966
Target:  5'- --gGCCaucgUGCggACGGCCACGGUGUg-- -3'
miRNA:   3'- ccaCGGg---ACG--UGCCGGUGCCACGaca -5'
30226 5' -61 NC_006273.1 + 232894 0.67 0.728966
Target:  5'- --cGCCCacaGCGCGGCgCGCgGGUGCagGUg -3'
miRNA:   3'- ccaCGGGa--CGUGCCG-GUG-CCACGa-CA- -5'
30226 5' -61 NC_006273.1 + 161677 0.67 0.738227
Target:  5'- cGGcGCUCUGC-CGGCUGCGGcgGCa-- -3'
miRNA:   3'- -CCaCGGGACGuGCCGGUGCCa-CGaca -5'
30226 5' -61 NC_006273.1 + 87687 0.67 0.756495
Target:  5'- -uUGCggUCUGaaaaGCGGCCACGGggGCUGc -3'
miRNA:   3'- ccACG--GGACg---UGCCGGUGCCa-CGACa -5'
30226 5' -61 NC_006273.1 + 217568 0.66 0.77437
Target:  5'- aGGUGCCCcagGCuuCGGCgGCGGcuuUGgUGa -3'
miRNA:   3'- -CCACGGGa--CGu-GCCGgUGCC---ACgACa -5'
30226 5' -61 NC_006273.1 + 156708 0.66 0.790933
Target:  5'- cGGUGCCC-GCGgacccCGGCCccuucucgcgugcGCGGUGUg-- -3'
miRNA:   3'- -CCACGGGaCGU-----GCCGG-------------UGCCACGaca -5'
30226 5' -61 NC_006273.1 + 148597 0.68 0.6721
Target:  5'- cGUGCCCgucuaCGCGGuCCACGGU-CUGc -3'
miRNA:   3'- cCACGGGac---GUGCC-GGUGCCAcGACa -5'
30226 5' -61 NC_006273.1 + 111324 0.68 0.662476
Target:  5'- gGGgagGCCUggccgcauaGCGCGGCCGCGccGCUGg -3'
miRNA:   3'- -CCa--CGGGa--------CGUGCCGGUGCcaCGACa -5'
30226 5' -61 NC_006273.1 + 174194 0.68 0.662476
Target:  5'- --gGCCUUGUGCGGCaCACuGGUGgUGg -3'
miRNA:   3'- ccaCGGGACGUGCCG-GUG-CCACgACa -5'
30226 5' -61 NC_006273.1 + 165038 0.74 0.344034
Target:  5'- -aUGCCCUcggGCGCGGCaGCGGUGCUc- -3'
miRNA:   3'- ccACGGGA---CGUGCCGgUGCCACGAca -5'
30226 5' -61 NC_006273.1 + 208416 0.74 0.366338
Target:  5'- aGGUGCCCaGCuuGGCCA-GGUaGCUGa -3'
miRNA:   3'- -CCACGGGaCGugCCGGUgCCA-CGACa -5'
30226 5' -61 NC_006273.1 + 101882 0.73 0.377082
Target:  5'- cGGUGCgcaggucgaugaacaCCUGCACGGUCucuugcggguuGCGGUGCgUGUa -3'
miRNA:   3'- -CCACG---------------GGACGUGCCGG-----------UGCCACG-ACA- -5'
30226 5' -61 NC_006273.1 + 184418 0.73 0.381751
Target:  5'- cGGUGUCUaUGU-CGGCCgGCGGUGCUGg -3'
miRNA:   3'- -CCACGGG-ACGuGCCGG-UGCCACGACa -5'
30226 5' -61 NC_006273.1 + 142827 0.72 0.438127
Target:  5'- cGUGCaccgcggUCUGCucACGGCCACGGgcUGCUGUc -3'
miRNA:   3'- cCACG-------GGACG--UGCCGGUGCC--ACGACA- -5'
30226 5' -61 NC_006273.1 + 152620 0.69 0.604523
Target:  5'- cGGUgGCCCgcUGCACGGCCGCGcGUa---- -3'
miRNA:   3'- -CCA-CGGG--ACGUGCCGGUGC-CAcgaca -5'
30226 5' -61 NC_006273.1 + 168352 0.69 0.623836
Target:  5'- uGGUcGCCCUGaUGCaGaugCACGGUGCUGUu -3'
miRNA:   3'- -CCA-CGGGAC-GUGcCg--GUGCCACGACA- -5'
30226 5' -61 NC_006273.1 + 81748 0.68 0.662476
Target:  5'- --aGCCCUGCGCGGagcCGG-GCUGc -3'
miRNA:   3'- ccaCGGGACGUGCCgguGCCaCGACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.