miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 185412 0.66 0.999999
Target:  5'- cGCGGccGACGugguGGACCAgCACCGc -3'
miRNA:   3'- -CGUCucUUGCuuuuUCUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 62000 0.66 0.999999
Target:  5'- uGCAGAcccuGcGCGAGAuccAGACCGUaauaGCCGa -3'
miRNA:   3'- -CGUCU----CuUGCUUUu--UCUGGUAg---UGGU- -5'
30227 3' -46 NC_006273.1 + 1252 0.66 0.999999
Target:  5'- gGCGG-GGACGggGAcggGGGCCuuUCGCg- -3'
miRNA:   3'- -CGUCuCUUGCuuUU---UCUGGu-AGUGgu -5'
30227 3' -46 NC_006273.1 + 177261 0.66 0.999999
Target:  5'- gGCgAGGGAuagaGAAAAGGACaguaaaaCGUCGCCGc -3'
miRNA:   3'- -CG-UCUCUug--CUUUUUCUG-------GUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 163117 0.66 0.999999
Target:  5'- -aGGAGGAUGAGGAGGGCUccggcugaggcggcGgaggCACCAc -3'
miRNA:   3'- cgUCUCUUGCUUUUUCUGG--------------Ua---GUGGU- -5'
30227 3' -46 NC_006273.1 + 229081 0.66 0.999999
Target:  5'- cGCGGAGAGCaaguucaccugguGGAAAcGACUG-CGCCAc -3'
miRNA:   3'- -CGUCUCUUG-------------CUUUUuCUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 69736 0.66 0.999999
Target:  5'- cGUAGGGGAacaGAGAccGGGCCGcggCACCGu -3'
miRNA:   3'- -CGUCUCUUg--CUUUu-UCUGGUa--GUGGU- -5'
30227 3' -46 NC_006273.1 + 143839 0.66 0.999999
Target:  5'- gGCGGGGAAaauacuGAGGcgccGCCAUCAUCAu -3'
miRNA:   3'- -CGUCUCUUgcuu--UUUC----UGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 109590 0.66 0.999999
Target:  5'- uCGGAGAcggucagcGCGGAGAAGGau-UCGCCGa -3'
miRNA:   3'- cGUCUCU--------UGCUUUUUCUgguAGUGGU- -5'
30227 3' -46 NC_006273.1 + 225668 0.66 0.999999
Target:  5'- cGCAGAaAGCaGAu---GACCAgugCACCAa -3'
miRNA:   3'- -CGUCUcUUG-CUuuuuCUGGUa--GUGGU- -5'
30227 3' -46 NC_006273.1 + 118623 0.66 0.999999
Target:  5'- gGCuGGAGAGCGA--GAGGCCGgcguaGCUg -3'
miRNA:   3'- -CG-UCUCUUGCUuuUUCUGGUag---UGGu -5'
30227 3' -46 NC_006273.1 + 141045 0.66 0.999999
Target:  5'- gGCGGuGGGACGGgcccgcgGAcGGACCggCGCCGg -3'
miRNA:   3'- -CGUC-UCUUGCU-------UUuUCUGGuaGUGGU- -5'
30227 3' -46 NC_006273.1 + 228177 0.66 0.999999
Target:  5'- -gAGAGAAUGccaguaAGAGAcGACCAUCGCa- -3'
miRNA:   3'- cgUCUCUUGC------UUUUU-CUGGUAGUGgu -5'
30227 3' -46 NC_006273.1 + 41190 0.66 0.999999
Target:  5'- gGCGG-GGACGggGAcggGGGCCuuUCGCg- -3'
miRNA:   3'- -CGUCuCUUGCuuUU---UCUGGu-AGUGgu -5'
30227 3' -46 NC_006273.1 + 69329 0.66 0.999998
Target:  5'- uGCGGuGGAUGAAGAAGAgCCAgaACUg -3'
miRNA:   3'- -CGUCuCUUGCUUUUUCU-GGUagUGGu -5'
30227 3' -46 NC_006273.1 + 213647 0.66 0.999998
Target:  5'- gGCAGcugagaucuaccgccAGGGCGAGAAGaGCCG-CGCCGa -3'
miRNA:   3'- -CGUC---------------UCUUGCUUUUUcUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 186459 0.66 0.999998
Target:  5'- cGCAcGAGGAgGccGAGAGucgccuguacgacGCCAUCACCGa -3'
miRNA:   3'- -CGU-CUCUUgCu-UUUUC-------------UGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 86888 0.66 0.999998
Target:  5'- aCGGAGGACGGuacgguAGAAGGCCG-C-CCGg -3'
miRNA:   3'- cGUCUCUUGCU------UUUUCUGGUaGuGGU- -5'
30227 3' -46 NC_006273.1 + 39594 0.66 0.999997
Target:  5'- gGCGGGGGGCGcggcGAcaugccguugcgcuGGGCCAUgGCCGc -3'
miRNA:   3'- -CGUCUCUUGCuu--UU--------------UCUGGUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 3437 0.66 0.999997
Target:  5'- uGCAGAacggcGACGGAGAGGAgCGUguCCGc -3'
miRNA:   3'- -CGUCUc----UUGCUUUUUCUgGUAguGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.