miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 37346 0.67 0.999994
Target:  5'- aGCGGAGGugGGccGGGGCCcguUUugCAu -3'
miRNA:   3'- -CGUCUCUugCUuuUUCUGGu--AGugGU- -5'
30227 3' -46 NC_006273.1 + 20511 0.67 0.999988
Target:  5'- cGCAGcGGcuuUGugccGAGACCGUCGCCAc -3'
miRNA:   3'- -CGUCuCUu--GCuuu-UUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 19227 0.67 0.999988
Target:  5'- aGCGacGAGGACGAAAgcGGCCGcccccggagaaUUGCCAa -3'
miRNA:   3'- -CGU--CUCUUGCUUUuuCUGGU-----------AGUGGU- -5'
30227 3' -46 NC_006273.1 + 118766 0.67 0.999994
Target:  5'- cGCAGcccaGGCaAAAAAGACCGUCGCgGa -3'
miRNA:   3'- -CGUCuc--UUGcUUUUUCUGGUAGUGgU- -5'
30227 3' -46 NC_006273.1 + 179226 0.67 0.999996
Target:  5'- aCAGAGGGCGuucGGAcGACCuccgcgucgGUCGCCGc -3'
miRNA:   3'- cGUCUCUUGCu--UUUuCUGG---------UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 98585 0.67 0.999996
Target:  5'- cGCGGAGAcGCGAGAc--ACCggCACCc -3'
miRNA:   3'- -CGUCUCU-UGCUUUuucUGGuaGUGGu -5'
30227 3' -46 NC_006273.1 + 129732 0.67 0.999991
Target:  5'- cGCGGAGGAagc--AAGGCCGcCGCCGu -3'
miRNA:   3'- -CGUCUCUUgcuuuUUCUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 8160 0.67 0.999991
Target:  5'- aGCAGcAGAGCuaauAAAAGGACgCA-CACCAg -3'
miRNA:   3'- -CGUC-UCUUGc---UUUUUCUG-GUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 102715 0.68 0.999959
Target:  5'- aCAGAGGACGuuguuuuuugGAAAAcGCCGUUACCc -3'
miRNA:   3'- cGUCUCUUGC----------UUUUUcUGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 186283 0.68 0.999977
Target:  5'- gGCGGAGGugGAAAugaGCCGUC-CUg -3'
miRNA:   3'- -CGUCUCUugCUUUuucUGGUAGuGGu -5'
30227 3' -46 NC_006273.1 + 163823 0.68 0.999977
Target:  5'- aGCGGG--ACGAAAAAcACCGUCACg- -3'
miRNA:   3'- -CGUCUcuUGCUUUUUcUGGUAGUGgu -5'
30227 3' -46 NC_006273.1 + 158341 0.68 0.999983
Target:  5'- aGCAGGGAGCGc--AAGGCCGagcgucguUCGCgCGg -3'
miRNA:   3'- -CGUCUCUUGCuuuUUCUGGU--------AGUG-GU- -5'
30227 3' -46 NC_006273.1 + 203282 0.68 0.999983
Target:  5'- aGCAGGGuGACGGAGGAGACacccguguguUCgACCGg -3'
miRNA:   3'- -CGUCUC-UUGCUUUUUCUGgu--------AG-UGGU- -5'
30227 3' -46 NC_006273.1 + 61933 0.68 0.999959
Target:  5'- gGCGGAG-ACGA---GGACCgGUUGCCGu -3'
miRNA:   3'- -CGUCUCuUGCUuuuUCUGG-UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 47622 0.68 0.999959
Target:  5'- cGUAGAuccGGAC--AGAGGACgGUCACCAu -3'
miRNA:   3'- -CGUCU---CUUGcuUUUUCUGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 156276 0.68 0.999983
Target:  5'- gGguGGGAGCGAc----GCCGUCGCUg -3'
miRNA:   3'- -CguCUCUUGCUuuuucUGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 152852 0.68 0.999969
Target:  5'- aGCGGccuGGGcgccGCGGGAAAGGCCGUUggcguaGCCAu -3'
miRNA:   3'- -CGUC---UCU----UGCUUUUUCUGGUAG------UGGU- -5'
30227 3' -46 NC_006273.1 + 169892 0.68 0.999977
Target:  5'- cGCuGAGGGggaGGAGGAGGCgGUgGCCAg -3'
miRNA:   3'- -CGuCUCUUg--CUUUUUCUGgUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 88647 0.68 0.999945
Target:  5'- gGCGGGcGACGAGAAacgcGGACUAgCACCu -3'
miRNA:   3'- -CGUCUcUUGCUUUU----UCUGGUaGUGGu -5'
30227 3' -46 NC_006273.1 + 64799 0.68 0.999959
Target:  5'- aCAGAcuGGGCGAcGAAGugCcgCGCCGc -3'
miRNA:   3'- cGUCU--CUUGCUuUUUCugGuaGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.