miRNA display CGI


Results 21 - 40 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 198011 0.72 0.99702
Target:  5'- uGUGGAGGACGggGuGGAgCggGUCGCCGa -3'
miRNA:   3'- -CGUCUCUUGCuuUuUCUgG--UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 120055 0.72 0.998244
Target:  5'- uGCAGAGGACGGAGGAacuuucGGCCGaaaCAUCGa -3'
miRNA:   3'- -CGUCUCUUGCUUUUU------CUGGUa--GUGGU- -5'
30227 3' -46 NC_006273.1 + 190380 0.71 0.999348
Target:  5'- cGCGGAGGGagGAGAGGGACgGgaacgaUCACCGc -3'
miRNA:   3'- -CGUCUCUUg-CUUUUUCUGgU------AGUGGU- -5'
30227 3' -46 NC_006273.1 + 204575 0.71 0.998544
Target:  5'- --cGAGGACGcAGAcGACCGUCGCUg -3'
miRNA:   3'- cguCUCUUGCuUUUuCUGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 118958 0.71 0.999014
Target:  5'- cGUAGcGGGCGAGAAagccgcccacguAGACCggCGCCAc -3'
miRNA:   3'- -CGUCuCUUGCUUUU------------UCUGGuaGUGGU- -5'
30227 3' -46 NC_006273.1 + 32283 0.71 0.998544
Target:  5'- -----cGACGAGcgGGACCGUCACCGu -3'
miRNA:   3'- cgucucUUGCUUuuUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 216034 0.71 0.999196
Target:  5'- gGUAGGGAGCcuGGGAGuCCAUCGCUu -3'
miRNA:   3'- -CGUCUCUUGcuUUUUCuGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 50312 0.71 0.999196
Target:  5'- gGCcGAGAACuau-GAGACCAcgUCGCCGg -3'
miRNA:   3'- -CGuCUCUUGcuuuUUCUGGU--AGUGGU- -5'
30227 3' -46 NC_006273.1 + 82300 0.71 0.998798
Target:  5'- cGCGGcguGGAUGAc-GAGGCCGUCAUCGa -3'
miRNA:   3'- -CGUCu--CUUGCUuuUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 167890 0.71 0.998798
Target:  5'- -gGGAGAACau----GACCAUCGCCGc -3'
miRNA:   3'- cgUCUCUUGcuuuuuCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 105177 0.71 0.999348
Target:  5'- cGC-GAGGACGggGAA-ACgGUCGCCGc -3'
miRNA:   3'- -CGuCUCUUGCuuUUUcUGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 208662 0.7 0.999736
Target:  5'- aGUAGAagccaGGACGcu---GACCAUCACCGu -3'
miRNA:   3'- -CGUCU-----CUUGCuuuuuCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 205417 0.7 0.999475
Target:  5'- cCGGAGGACGu-GAAGGCUuggaGUCACUAc -3'
miRNA:   3'- cGUCUCUUGCuuUUUCUGG----UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 13491 0.7 0.99958
Target:  5'- uGCuGAacguGAUGAAAGAGGCCGUCGCgGa -3'
miRNA:   3'- -CGuCUc---UUGCUUUUUCUGGUAGUGgU- -5'
30227 3' -46 NC_006273.1 + 72868 0.7 0.999736
Target:  5'- aGCAccGuGAcGCGAGGAGGGCCGggacUCACCGu -3'
miRNA:   3'- -CGU--CuCU-UGCUUUUUCUGGU----AGUGGU- -5'
30227 3' -46 NC_006273.1 + 130763 0.7 0.999793
Target:  5'- cGCuccGAGGACGucgc-GGCUAUCACCGu -3'
miRNA:   3'- -CGu--CUCUUGCuuuuuCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 73006 0.7 0.999793
Target:  5'- cGCAGGaAGCGuugguAGAGACgGUCGCCc -3'
miRNA:   3'- -CGUCUcUUGCuu---UUUCUGgUAGUGGu -5'
30227 3' -46 NC_006273.1 + 69458 0.7 0.999793
Target:  5'- gGCGGAGGACuc--AAGAacgUCGUCACCAc -3'
miRNA:   3'- -CGUCUCUUGcuuuUUCU---GGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 22697 0.7 0.999475
Target:  5'- -uGGGGAGCGcgcacAAAGGACCGUCaggcGCCGg -3'
miRNA:   3'- cgUCUCUUGCu----UUUUCUGGUAG----UGGU- -5'
30227 3' -46 NC_006273.1 + 7408 0.7 0.99958
Target:  5'- cGCuGAGAugGAAccGAAGucgcuGCCGuUCGCCAg -3'
miRNA:   3'- -CGuCUCUugCUU--UUUC-----UGGU-AGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.