Results 41 - 60 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30227 | 3' | -46 | NC_006273.1 | + | 208662 | 0.7 | 0.999736 |
Target: 5'- aGUAGAagccaGGACGcu---GACCAUCACCGu -3' miRNA: 3'- -CGUCU-----CUUGCuuuuuCUGGUAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 22697 | 0.7 | 0.999475 |
Target: 5'- -uGGGGAGCGcgcacAAAGGACCGUCaggcGCCGg -3' miRNA: 3'- cgUCUCUUGCu----UUUUCUGGUAG----UGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 13491 | 0.7 | 0.99958 |
Target: 5'- uGCuGAacguGAUGAAAGAGGCCGUCGCgGa -3' miRNA: 3'- -CGuCUc---UUGCUUUUUCUGGUAGUGgU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 7408 | 0.7 | 0.99958 |
Target: 5'- cGCuGAGAugGAAccGAAGucgcuGCCGuUCGCCAg -3' miRNA: 3'- -CGuCUCUugCUU--UUUC-----UGGU-AGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 205417 | 0.7 | 0.999475 |
Target: 5'- cCGGAGGACGu-GAAGGCUuggaGUCACUAc -3' miRNA: 3'- cGUCUCUUGCuuUUUCUGG----UAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 105355 | 0.69 | 0.999875 |
Target: 5'- -aGGAGGAUGAAGu-GACCgugauGUCGCCGu -3' miRNA: 3'- cgUCUCUUGCUUUuuCUGG-----UAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 82065 | 0.69 | 0.999875 |
Target: 5'- gGCAGaAGAggagACGGAGGAGugaACgGUCGCCGu -3' miRNA: 3'- -CGUC-UCU----UGCUUUUUC---UGgUAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 85231 | 0.69 | 0.999904 |
Target: 5'- -aAGAacaaGACGGAGGAGAcaCCGUCGCCGu -3' miRNA: 3'- cgUCUc---UUGCUUUUUCU--GGUAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 42385 | 0.69 | 0.999904 |
Target: 5'- gGCGGuGAGCac--GAGGCCAUCcCCAa -3' miRNA: 3'- -CGUCuCUUGcuuuUUCUGGUAGuGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 139568 | 0.69 | 0.999927 |
Target: 5'- gGCAuGAcGAGCGAGAgaaccgucGAGAaaGUCACCAa -3' miRNA: 3'- -CGU-CU-CUUGCUUU--------UUCUggUAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 107458 | 0.69 | 0.999927 |
Target: 5'- aCGGuGAACGAAAugaagcAGGACUuugugGUCACCGa -3' miRNA: 3'- cGUCuCUUGCUUU------UUCUGG-----UAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 53936 | 0.69 | 0.999875 |
Target: 5'- aGCAGuacacgucGAGCGucauGAGGACCAugUCGCCu -3' miRNA: 3'- -CGUCu-------CUUGCuu--UUUCUGGU--AGUGGu -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 208022 | 0.69 | 0.999927 |
Target: 5'- cCAGAGAAgGGAGGGGGCaaaaACCAg -3' miRNA: 3'- cGUCUCUUgCUUUUUCUGguagUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 83491 | 0.69 | 0.999875 |
Target: 5'- cGCAGGuGGACGAGAuccAGGACCugcgCACg- -3' miRNA: 3'- -CGUCU-CUUGCUUU---UUCUGGua--GUGgu -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 61933 | 0.68 | 0.999959 |
Target: 5'- gGCGGAG-ACGA---GGACCgGUUGCCGu -3' miRNA: 3'- -CGUCUCuUGCUuuuUCUGG-UAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 156276 | 0.68 | 0.999983 |
Target: 5'- gGguGGGAGCGAc----GCCGUCGCUg -3' miRNA: 3'- -CguCUCUUGCUuuuucUGGUAGUGGu -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 102715 | 0.68 | 0.999959 |
Target: 5'- aCAGAGGACGuuguuuuuugGAAAAcGCCGUUACCc -3' miRNA: 3'- cGUCUCUUGC----------UUUUUcUGGUAGUGGu -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 64799 | 0.68 | 0.999959 |
Target: 5'- aCAGAcuGGGCGAcGAAGugCcgCGCCGc -3' miRNA: 3'- cGUCU--CUUGCUuUUUCugGuaGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 88647 | 0.68 | 0.999945 |
Target: 5'- gGCGGGcGACGAGAAacgcGGACUAgCACCu -3' miRNA: 3'- -CGUCUcUUGCUUUU----UCUGGUaGUGGu -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 201865 | 0.68 | 0.999966 |
Target: 5'- aCAGAGAGagaaGGGuuuucgggucacgcGAAGACCGcUCACCGg -3' miRNA: 3'- cGUCUCUUg---CUU--------------UUUCUGGU-AGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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