miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 88647 0.68 0.999945
Target:  5'- gGCGGGcGACGAGAAacgcGGACUAgCACCu -3'
miRNA:   3'- -CGUCUcUUGCUUUU----UCUGGUaGUGGu -5'
30227 3' -46 NC_006273.1 + 211708 0.68 0.999969
Target:  5'- cGUAGAGGAgGAGcaggcgcuGGCCAcgaUCACCGa -3'
miRNA:   3'- -CGUCUCUUgCUUuuu-----CUGGU---AGUGGU- -5'
30227 3' -46 NC_006273.1 + 152852 0.68 0.999969
Target:  5'- aGCGGccuGGGcgccGCGGGAAAGGCCGUUggcguaGCCAu -3'
miRNA:   3'- -CGUC---UCU----UGCUUUUUCUGGUAG------UGGU- -5'
30227 3' -46 NC_006273.1 + 136678 0.68 0.999969
Target:  5'- --uGAGGACGAGGAGacgacgaccGGCCGgUCGCCGc -3'
miRNA:   3'- cguCUCUUGCUUUUU---------CUGGU-AGUGGU- -5'
30227 3' -46 NC_006273.1 + 156276 0.68 0.999983
Target:  5'- gGguGGGAGCGAc----GCCGUCGCUg -3'
miRNA:   3'- -CguCUCUUGCUuuuucUGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 163823 0.68 0.999977
Target:  5'- aGCGGG--ACGAAAAAcACCGUCACg- -3'
miRNA:   3'- -CGUCUcuUGCUUUUUcUGGUAGUGgu -5'
30227 3' -46 NC_006273.1 + 158341 0.68 0.999983
Target:  5'- aGCAGGGAGCGc--AAGGCCGagcgucguUCGCgCGg -3'
miRNA:   3'- -CGUCUCUUGCuuuUUCUGGU--------AGUG-GU- -5'
30227 3' -46 NC_006273.1 + 203282 0.68 0.999983
Target:  5'- aGCAGGGuGACGGAGGAGACacccguguguUCgACCGg -3'
miRNA:   3'- -CGUCUC-UUGCUUUUUCUGgu--------AG-UGGU- -5'
30227 3' -46 NC_006273.1 + 169892 0.68 0.999977
Target:  5'- cGCuGAGGGggaGGAGGAGGCgGUgGCCAg -3'
miRNA:   3'- -CGuCUCUUg--CUUUUUCUGgUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 170357 0.68 0.999983
Target:  5'- cGCGGAGcuguGCGGAucAAAGACCAaCAUg- -3'
miRNA:   3'- -CGUCUCu---UGCUU--UUUCUGGUaGUGgu -5'
30227 3' -46 NC_006273.1 + 73308 0.68 0.999969
Target:  5'- uCGGAGAcgACGAuu--GGCCAUgACCGc -3'
miRNA:   3'- cGUCUCU--UGCUuuuuCUGGUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 47622 0.68 0.999959
Target:  5'- cGUAGAuccGGAC--AGAGGACgGUCACCAu -3'
miRNA:   3'- -CGUCU---CUUGcuUUUUCUGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 186283 0.68 0.999977
Target:  5'- gGCGGAGGugGAAAugaGCCGUC-CUg -3'
miRNA:   3'- -CGUCUCUugCUUUuucUGGUAGuGGu -5'
30227 3' -46 NC_006273.1 + 61933 0.68 0.999959
Target:  5'- gGCGGAG-ACGA---GGACCgGUUGCCGu -3'
miRNA:   3'- -CGUCUCuUGCUuuuUCUGG-UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 214382 0.68 0.999977
Target:  5'- aGCAGAgcGAGCGugaggaacGAAAGcAgCAUCACCAc -3'
miRNA:   3'- -CGUCU--CUUGCu-------UUUUC-UgGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 38515 0.67 0.999996
Target:  5'- -gGGAGGACGAAggaggggagacGAGGACgAcgggCACCAc -3'
miRNA:   3'- cgUCUCUUGCUU-----------UUUCUGgUa---GUGGU- -5'
30227 3' -46 NC_006273.1 + 76246 0.67 0.999988
Target:  5'- -aGGAGGagACGAuccGGGCCGUCACa- -3'
miRNA:   3'- cgUCUCU--UGCUuuuUCUGGUAGUGgu -5'
30227 3' -46 NC_006273.1 + 37255 0.67 0.999996
Target:  5'- gGCGGcGAcgACGAGGAGGaagacGCCGUgGCCGc -3'
miRNA:   3'- -CGUCuCU--UGCUUUUUC-----UGGUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 170933 0.67 0.999996
Target:  5'- -aAGGGAGUGGAGAGGGCCAgguugCACa- -3'
miRNA:   3'- cgUCUCUUGCUUUUUCUGGUa----GUGgu -5'
30227 3' -46 NC_006273.1 + 166585 0.67 0.999996
Target:  5'- aCAGGGccaGGAAAAGcaaccagccccGCCAUCGCCGc -3'
miRNA:   3'- cGUCUCuugCUUUUUC-----------UGGUAGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.