miRNA display CGI


Results 1 - 20 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 212752 1.13 0.025966
Target:  5'- uGCAGAGAACGAAAAAGACCAUCACCAg -3'
miRNA:   3'- -CGUCUCUUGCUUUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 74539 0.86 0.585899
Target:  5'- cCAGAGA--GGAAGAGACCAUCACCGa -3'
miRNA:   3'- cGUCUCUugCUUUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 137676 0.8 0.885586
Target:  5'- cGUAGAGAACGAuggAGGAcGACCAaCACCGa -3'
miRNA:   3'- -CGUCUCUUGCU---UUUU-CUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 171338 0.79 0.918448
Target:  5'- aGCAGAGA--GGAGGAGGCCG-CGCCAc -3'
miRNA:   3'- -CGUCUCUugCUUUUUCUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 112389 0.78 0.939609
Target:  5'- aGCAGu--GCGAgcucgacGAAGGACCGUCGCCGc -3'
miRNA:   3'- -CGUCucuUGCU-------UUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 120134 0.78 0.944865
Target:  5'- aGCAGAGAACc--GAGGGCCGgcUCACCu -3'
miRNA:   3'- -CGUCUCUUGcuuUUUCUGGU--AGUGGu -5'
30227 3' -46 NC_006273.1 + 34048 0.77 0.953633
Target:  5'- cGCGGAGGGCGAcaaAGAGGAgUgGUCGCCGc -3'
miRNA:   3'- -CGUCUCUUGCU---UUUUCU-GgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 71641 0.77 0.961408
Target:  5'- -gGGAGGACGAGGAGGA-CGUCGCUg -3'
miRNA:   3'- cgUCUCUUGCUUUUUCUgGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 141623 0.76 0.964935
Target:  5'- uGCAGcccuaGGAACaGGGAAGACUGUCGCCAc -3'
miRNA:   3'- -CGUC-----UCUUGcUUUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 20899 0.76 0.971299
Target:  5'- -aGGAGAACGAGGAagguGGACCGugugaaUCGCCGc -3'
miRNA:   3'- cgUCUCUUGCUUUU----UCUGGU------AGUGGU- -5'
30227 3' -46 NC_006273.1 + 99160 0.75 0.981462
Target:  5'- cGguGGGGAaaaGGAGGGGGCCGUCAUUAa -3'
miRNA:   3'- -CguCUCUUg--CUUUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 202193 0.74 0.990056
Target:  5'- ---cGGAACGGAGGAGGCUuUCGCCAc -3'
miRNA:   3'- cgucUCUUGCUUUUUCUGGuAGUGGU- -5'
30227 3' -46 NC_006273.1 + 72544 0.74 0.990954
Target:  5'- cGCGGAGGAUGAggacgaguaauugaGAAAGGCCAcCGCUu -3'
miRNA:   3'- -CGUCUCUUGCU--------------UUUUCUGGUaGUGGu -5'
30227 3' -46 NC_006273.1 + 147104 0.74 0.991318
Target:  5'- uGCuGAGAAUGAAGaggaaggcuguGAGGCUGUCGCCc -3'
miRNA:   3'- -CGuCUCUUGCUUU-----------UUCUGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 47322 0.74 0.992451
Target:  5'- -uGGuGGACGAGAcGAGACCcgCGCCGc -3'
miRNA:   3'- cgUCuCUUGCUUU-UUCUGGuaGUGGU- -5'
30227 3' -46 NC_006273.1 + 83833 0.73 0.993463
Target:  5'- uCAGGGGGCcGAAGAGGCCAUCGuauacuCCAa -3'
miRNA:   3'- cGUCUCUUGcUUUUUCUGGUAGU------GGU- -5'
30227 3' -46 NC_006273.1 + 212057 0.73 0.994363
Target:  5'- cGCGGGGGugGggGcgcccAGGCCGUC-CCGg -3'
miRNA:   3'- -CGUCUCUugCuuUu----UCUGGUAGuGGU- -5'
30227 3' -46 NC_006273.1 + 213960 0.73 0.99516
Target:  5'- aGCAGAGGugGAcucggauAGAGACCucUgGCCAg -3'
miRNA:   3'- -CGUCUCUugCUu------UUUCUGGu-AgUGGU- -5'
30227 3' -46 NC_006273.1 + 34868 0.73 0.995863
Target:  5'- aGCGGAucGCGAAAuAGGCgcuCGUCACCGu -3'
miRNA:   3'- -CGUCUcuUGCUUUuUCUG---GUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 198011 0.72 0.99702
Target:  5'- uGUGGAGGACGggGuGGAgCggGUCGCCGa -3'
miRNA:   3'- -CGUCUCUUGCuuUuUCUgG--UAGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.