Results 41 - 60 of 123 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30227 | 3' | -46 | NC_006273.1 | + | 72868 | 0.7 | 0.999736 |
Target: 5'- aGCAccGuGAcGCGAGGAGGGCCGggacUCACCGu -3' miRNA: 3'- -CGU--CuCU-UGCUUUUUCUGGU----AGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 69458 | 0.7 | 0.999793 |
Target: 5'- gGCGGAGGACuc--AAGAacgUCGUCACCAc -3' miRNA: 3'- -CGUCUCUUGcuuuUUCU---GGUAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 73006 | 0.7 | 0.999793 |
Target: 5'- cGCAGGaAGCGuugguAGAGACgGUCGCCc -3' miRNA: 3'- -CGUCUcUUGCuu---UUUCUGgUAGUGGu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 130763 | 0.7 | 0.999793 |
Target: 5'- cGCuccGAGGACGucgc-GGCUAUCACCGu -3' miRNA: 3'- -CGu--CUCUUGCuuuuuCUGGUAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 233703 | 0.7 | 0.999793 |
Target: 5'- cGCGGGGGACGggGuAGccgagcgcugcGCCcUCGCCu -3' miRNA: 3'- -CGUCUCUUGCuuUuUC-----------UGGuAGUGGu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 53936 | 0.69 | 0.999875 |
Target: 5'- aGCAGuacacgucGAGCGucauGAGGACCAugUCGCCu -3' miRNA: 3'- -CGUCu-------CUUGCuu--UUUCUGGU--AGUGGu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 105355 | 0.69 | 0.999875 |
Target: 5'- -aGGAGGAUGAAGu-GACCgugauGUCGCCGu -3' miRNA: 3'- cgUCUCUUGCUUUuuCUGG-----UAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 83491 | 0.69 | 0.999875 |
Target: 5'- cGCAGGuGGACGAGAuccAGGACCugcgCACg- -3' miRNA: 3'- -CGUCU-CUUGCUUU---UUCUGGua--GUGgu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 82065 | 0.69 | 0.999875 |
Target: 5'- gGCAGaAGAggagACGGAGGAGugaACgGUCGCCGu -3' miRNA: 3'- -CGUC-UCU----UGCUUUUUC---UGgUAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 42385 | 0.69 | 0.999904 |
Target: 5'- gGCGGuGAGCac--GAGGCCAUCcCCAa -3' miRNA: 3'- -CGUCuCUUGcuuuUUCUGGUAGuGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 85231 | 0.69 | 0.999904 |
Target: 5'- -aAGAacaaGACGGAGGAGAcaCCGUCGCCGu -3' miRNA: 3'- cgUCUc---UUGCUUUUUCU--GGUAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 139568 | 0.69 | 0.999927 |
Target: 5'- gGCAuGAcGAGCGAGAgaaccgucGAGAaaGUCACCAa -3' miRNA: 3'- -CGU-CU-CUUGCUUU--------UUCUggUAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 208022 | 0.69 | 0.999927 |
Target: 5'- cCAGAGAAgGGAGGGGGCaaaaACCAg -3' miRNA: 3'- cGUCUCUUgCUUUUUCUGguagUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 107458 | 0.69 | 0.999927 |
Target: 5'- aCGGuGAACGAAAugaagcAGGACUuugugGUCACCGa -3' miRNA: 3'- cGUCuCUUGCUUU------UUCUGG-----UAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 88647 | 0.68 | 0.999945 |
Target: 5'- gGCGGGcGACGAGAAacgcGGACUAgCACCu -3' miRNA: 3'- -CGUCUcUUGCUUUU----UCUGGUaGUGGu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 64799 | 0.68 | 0.999959 |
Target: 5'- aCAGAcuGGGCGAcGAAGugCcgCGCCGc -3' miRNA: 3'- cGUCU--CUUGCUuUUUCugGuaGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 102715 | 0.68 | 0.999959 |
Target: 5'- aCAGAGGACGuuguuuuuugGAAAAcGCCGUUACCc -3' miRNA: 3'- cGUCUCUUGC----------UUUUUcUGGUAGUGGu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 61933 | 0.68 | 0.999959 |
Target: 5'- gGCGGAG-ACGA---GGACCgGUUGCCGu -3' miRNA: 3'- -CGUCUCuUGCUuuuUCUGG-UAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 47622 | 0.68 | 0.999959 |
Target: 5'- cGUAGAuccGGAC--AGAGGACgGUCACCAu -3' miRNA: 3'- -CGUCU---CUUGcuUUUUCUGgUAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 201865 | 0.68 | 0.999966 |
Target: 5'- aCAGAGAGagaaGGGuuuucgggucacgcGAAGACCGcUCACCGg -3' miRNA: 3'- cGUCUCUUg---CUU--------------UUUCUGGU-AGUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home