miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 36944 0.66 0.999997
Target:  5'- gGCAGGuGGCGugcGAGACCGU-GCCAa -3'
miRNA:   3'- -CGUCUcUUGCuuuUUCUGGUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 234487 0.66 0.999997
Target:  5'- gGCGGGGGGCGcggcGAcaugccguugcgcuGGGCCAUgGCCGc -3'
miRNA:   3'- -CGUCUCUUGCuu--UU--------------UCUGGUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 62875 0.67 0.999996
Target:  5'- cUAGuguGGAUGAccuacGGGCCAUCGCCGa -3'
miRNA:   3'- cGUCu--CUUGCUuuu--UCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 179226 0.67 0.999996
Target:  5'- aCAGAGGGCGuucGGAcGACCuccgcgucgGUCGCCGc -3'
miRNA:   3'- cGUCUCUUGCu--UUUuCUGG---------UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 211659 0.67 0.999996
Target:  5'- uGCAGAGGcuaaaaagcACGcaagccAAGAGGCCcgagaagGUCACCAg -3'
miRNA:   3'- -CGUCUCU---------UGCu-----UUUUCUGG-------UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 170933 0.67 0.999996
Target:  5'- -aAGGGAGUGGAGAGGGCCAgguugCACa- -3'
miRNA:   3'- cgUCUCUUGCUUUUUCUGGUa----GUGgu -5'
30227 3' -46 NC_006273.1 + 38515 0.67 0.999996
Target:  5'- -gGGAGGACGAAggaggggagacGAGGACgAcgggCACCAc -3'
miRNA:   3'- cgUCUCUUGCUU-----------UUUCUGgUa---GUGGU- -5'
30227 3' -46 NC_006273.1 + 84023 0.67 0.999996
Target:  5'- uGCAGcc-GCGAGAAGGcgcGCCggCGCCAa -3'
miRNA:   3'- -CGUCucuUGCUUUUUC---UGGuaGUGGU- -5'
30227 3' -46 NC_006273.1 + 37255 0.67 0.999996
Target:  5'- gGCGGcGAcgACGAGGAGGaagacGCCGUgGCCGc -3'
miRNA:   3'- -CGUCuCU--UGCUUUUUC-----UGGUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 98585 0.67 0.999996
Target:  5'- cGCGGAGAcGCGAGAc--ACCggCACCc -3'
miRNA:   3'- -CGUCUCU-UGCUUUuucUGGuaGUGGu -5'
30227 3' -46 NC_006273.1 + 166585 0.67 0.999996
Target:  5'- aCAGGGccaGGAAAAGcaaccagccccGCCAUCGCCGc -3'
miRNA:   3'- cGUCUCuugCUUUUUC-----------UGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 118766 0.67 0.999994
Target:  5'- cGCAGcccaGGCaAAAAAGACCGUCGCgGa -3'
miRNA:   3'- -CGUCuc--UUGcUUUUUCUGGUAGUGgU- -5'
30227 3' -46 NC_006273.1 + 20135 0.67 0.999994
Target:  5'- gGCAGAGGaugcACGAGAcgcGGACgCAgaacgugccgaaUCACCAc -3'
miRNA:   3'- -CGUCUCU----UGCUUUu--UCUG-GU------------AGUGGU- -5'
30227 3' -46 NC_006273.1 + 116330 0.67 0.999994
Target:  5'- -aAGAGGACGAcGAAGAugaccucuccuCCA-CACCGa -3'
miRNA:   3'- cgUCUCUUGCUuUUUCU-----------GGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 210766 0.67 0.999994
Target:  5'- aGCGGAaauacacgaaGAGCGc-GGAGGCCAcaggCACCAg -3'
miRNA:   3'- -CGUCU----------CUUGCuuUUUCUGGUa---GUGGU- -5'
30227 3' -46 NC_006273.1 + 187194 0.67 0.999994
Target:  5'- aGCAGAGAAUGucAAAAcGA-CAUUACCGc -3'
miRNA:   3'- -CGUCUCUUGCu-UUUU-CUgGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 37346 0.67 0.999994
Target:  5'- aGCGGAGGugGGccGGGGCCcguUUugCAu -3'
miRNA:   3'- -CGUCUCUugCUuuUUCUGGu--AGugGU- -5'
30227 3' -46 NC_006273.1 + 59715 0.67 0.999994
Target:  5'- aGguGAcaGACGAuauGAGGCCAuaUCGCCGa -3'
miRNA:   3'- -CguCUc-UUGCUuu-UUCUGGU--AGUGGU- -5'
30227 3' -46 NC_006273.1 + 71948 0.67 0.999991
Target:  5'- gGCGGAcauGCGAcugcuGGGGGGCCAaCGCCGg -3'
miRNA:   3'- -CGUCUcu-UGCU-----UUUUCUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 8160 0.67 0.999991
Target:  5'- aGCAGcAGAGCuaauAAAAGGACgCA-CACCAg -3'
miRNA:   3'- -CGUC-UCUUGc---UUUUUCUG-GUaGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.