Results 41 - 60 of 123 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30227 | 3' | -46 | NC_006273.1 | + | 144762 | 0.67 | 0.999991 |
Target: 5'- uGCGGAGGcACGAcgcggcGGCCGUgGCCu -3' miRNA: 3'- -CGUCUCU-UGCUuuuu--CUGGUAgUGGu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 129732 | 0.67 | 0.999991 |
Target: 5'- cGCGGAGGAagc--AAGGCCGcCGCCGu -3' miRNA: 3'- -CGUCUCUUgcuuuUUCUGGUaGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 71948 | 0.67 | 0.999991 |
Target: 5'- gGCGGAcauGCGAcugcuGGGGGGCCAaCGCCGg -3' miRNA: 3'- -CGUCUcu-UGCU-----UUUUCUGGUaGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 128739 | 0.67 | 0.999991 |
Target: 5'- cGgGGAGGAUGAAGcgucgucGCCAUUACCGu -3' miRNA: 3'- -CgUCUCUUGCUUUuuc----UGGUAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 8160 | 0.67 | 0.999991 |
Target: 5'- aGCAGcAGAGCuaauAAAAGGACgCA-CACCAg -3' miRNA: 3'- -CGUC-UCUUGc---UUUUUCUG-GUaGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 19227 | 0.67 | 0.999988 |
Target: 5'- aGCGacGAGGACGAAAgcGGCCGcccccggagaaUUGCCAa -3' miRNA: 3'- -CGU--CUCUUGCUUUuuCUGGU-----------AGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 76246 | 0.67 | 0.999988 |
Target: 5'- -aGGAGGagACGAuccGGGCCGUCACa- -3' miRNA: 3'- cgUCUCU--UGCUuuuUCUGGUAGUGgu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 20511 | 0.67 | 0.999988 |
Target: 5'- cGCAGcGGcuuUGugccGAGACCGUCGCCAc -3' miRNA: 3'- -CGUCuCUu--GCuuu-UUCUGGUAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 170357 | 0.68 | 0.999983 |
Target: 5'- cGCGGAGcuguGCGGAucAAAGACCAaCAUg- -3' miRNA: 3'- -CGUCUCu---UGCUU--UUUCUGGUaGUGgu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 156276 | 0.68 | 0.999983 |
Target: 5'- gGguGGGAGCGAc----GCCGUCGCUg -3' miRNA: 3'- -CguCUCUUGCUuuuucUGGUAGUGGu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 158341 | 0.68 | 0.999983 |
Target: 5'- aGCAGGGAGCGc--AAGGCCGagcgucguUCGCgCGg -3' miRNA: 3'- -CGUCUCUUGCuuuUUCUGGU--------AGUG-GU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 203282 | 0.68 | 0.999983 |
Target: 5'- aGCAGGGuGACGGAGGAGACacccguguguUCgACCGg -3' miRNA: 3'- -CGUCUC-UUGCUUUUUCUGgu--------AG-UGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 169892 | 0.68 | 0.999977 |
Target: 5'- cGCuGAGGGggaGGAGGAGGCgGUgGCCAg -3' miRNA: 3'- -CGuCUCUUg--CUUUUUCUGgUAgUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 186283 | 0.68 | 0.999977 |
Target: 5'- gGCGGAGGugGAAAugaGCCGUC-CUg -3' miRNA: 3'- -CGUCUCUugCUUUuucUGGUAGuGGu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 214382 | 0.68 | 0.999977 |
Target: 5'- aGCAGAgcGAGCGugaggaacGAAAGcAgCAUCACCAc -3' miRNA: 3'- -CGUCU--CUUGCu-------UUUUC-UgGUAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 163823 | 0.68 | 0.999977 |
Target: 5'- aGCGGG--ACGAAAAAcACCGUCACg- -3' miRNA: 3'- -CGUCUcuUGCUUUUUcUGGUAGUGgu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 152852 | 0.68 | 0.999969 |
Target: 5'- aGCGGccuGGGcgccGCGGGAAAGGCCGUUggcguaGCCAu -3' miRNA: 3'- -CGUC---UCU----UGCUUUUUCUGGUAG------UGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 58975 | 0.68 | 0.999969 |
Target: 5'- gGCuGAGAuucGCG----GGAUCGUCACCAc -3' miRNA: 3'- -CGuCUCU---UGCuuuuUCUGGUAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 211708 | 0.68 | 0.999969 |
Target: 5'- cGUAGAGGAgGAGcaggcgcuGGCCAcgaUCACCGa -3' miRNA: 3'- -CGUCUCUUgCUUuuu-----CUGGU---AGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 73308 | 0.68 | 0.999969 |
Target: 5'- uCGGAGAcgACGAuu--GGCCAUgACCGc -3' miRNA: 3'- cGUCUCU--UGCUuuuuCUGGUAgUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home