miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 58975 0.68 0.999969
Target:  5'- gGCuGAGAuucGCG----GGAUCGUCACCAc -3'
miRNA:   3'- -CGuCUCU---UGCuuuuUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 211708 0.68 0.999969
Target:  5'- cGUAGAGGAgGAGcaggcgcuGGCCAcgaUCACCGa -3'
miRNA:   3'- -CGUCUCUUgCUUuuu-----CUGGU---AGUGGU- -5'
30227 3' -46 NC_006273.1 + 109297 0.68 0.999969
Target:  5'- uGUAGGGAuccaggGCGAAAAGGAC-GUCGuCCGa -3'
miRNA:   3'- -CGUCUCU------UGCUUUUUCUGgUAGU-GGU- -5'
30227 3' -46 NC_006273.1 + 201865 0.68 0.999966
Target:  5'- aCAGAGAGagaaGGGuuuucgggucacgcGAAGACCGcUCACCGg -3'
miRNA:   3'- cGUCUCUUg---CUU--------------UUUCUGGU-AGUGGU- -5'
30227 3' -46 NC_006273.1 + 47622 0.68 0.999959
Target:  5'- cGUAGAuccGGAC--AGAGGACgGUCACCAu -3'
miRNA:   3'- -CGUCU---CUUGcuUUUUCUGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 61933 0.68 0.999959
Target:  5'- gGCGGAG-ACGA---GGACCgGUUGCCGu -3'
miRNA:   3'- -CGUCUCuUGCUuuuUCUGG-UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 64799 0.68 0.999959
Target:  5'- aCAGAcuGGGCGAcGAAGugCcgCGCCGc -3'
miRNA:   3'- cGUCU--CUUGCUuUUUCugGuaGUGGU- -5'
30227 3' -46 NC_006273.1 + 102715 0.68 0.999959
Target:  5'- aCAGAGGACGuuguuuuuugGAAAAcGCCGUUACCc -3'
miRNA:   3'- cGUCUCUUGC----------UUUUUcUGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 88647 0.68 0.999945
Target:  5'- gGCGGGcGACGAGAAacgcGGACUAgCACCu -3'
miRNA:   3'- -CGUCUcUUGCUUUU----UCUGGUaGUGGu -5'
30227 3' -46 NC_006273.1 + 208022 0.69 0.999927
Target:  5'- cCAGAGAAgGGAGGGGGCaaaaACCAg -3'
miRNA:   3'- cGUCUCUUgCUUUUUCUGguagUGGU- -5'
30227 3' -46 NC_006273.1 + 107458 0.69 0.999927
Target:  5'- aCGGuGAACGAAAugaagcAGGACUuugugGUCACCGa -3'
miRNA:   3'- cGUCuCUUGCUUU------UUCUGG-----UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 139568 0.69 0.999927
Target:  5'- gGCAuGAcGAGCGAGAgaaccgucGAGAaaGUCACCAa -3'
miRNA:   3'- -CGU-CU-CUUGCUUU--------UUCUggUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 85231 0.69 0.999904
Target:  5'- -aAGAacaaGACGGAGGAGAcaCCGUCGCCGu -3'
miRNA:   3'- cgUCUc---UUGCUUUUUCU--GGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 42385 0.69 0.999904
Target:  5'- gGCGGuGAGCac--GAGGCCAUCcCCAa -3'
miRNA:   3'- -CGUCuCUUGcuuuUUCUGGUAGuGGU- -5'
30227 3' -46 NC_006273.1 + 53936 0.69 0.999875
Target:  5'- aGCAGuacacgucGAGCGucauGAGGACCAugUCGCCu -3'
miRNA:   3'- -CGUCu-------CUUGCuu--UUUCUGGU--AGUGGu -5'
30227 3' -46 NC_006273.1 + 105355 0.69 0.999875
Target:  5'- -aGGAGGAUGAAGu-GACCgugauGUCGCCGu -3'
miRNA:   3'- cgUCUCUUGCUUUuuCUGG-----UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 83491 0.69 0.999875
Target:  5'- cGCAGGuGGACGAGAuccAGGACCugcgCACg- -3'
miRNA:   3'- -CGUCU-CUUGCUUU---UUCUGGua--GUGgu -5'
30227 3' -46 NC_006273.1 + 82065 0.69 0.999875
Target:  5'- gGCAGaAGAggagACGGAGGAGugaACgGUCGCCGu -3'
miRNA:   3'- -CGUC-UCU----UGCUUUUUC---UGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 130763 0.7 0.999793
Target:  5'- cGCuccGAGGACGucgc-GGCUAUCACCGu -3'
miRNA:   3'- -CGu--CUCUUGCuuuuuCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 73006 0.7 0.999793
Target:  5'- cGCAGGaAGCGuugguAGAGACgGUCGCCc -3'
miRNA:   3'- -CGUCUcUUGCuu---UUUCUGgUAGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.