Results 81 - 100 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30227 | 3' | -46 | NC_006273.1 | + | 69458 | 0.7 | 0.999793 |
Target: 5'- gGCGGAGGACuc--AAGAacgUCGUCACCAc -3' miRNA: 3'- -CGUCUCUUGcuuuUUCU---GGUAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 233703 | 0.7 | 0.999793 |
Target: 5'- cGCGGGGGACGggGuAGccgagcgcugcGCCcUCGCCu -3' miRNA: 3'- -CGUCUCUUGCuuUuUC-----------UGGuAGUGGu -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 31768 | 0.7 | 0.999736 |
Target: 5'- ----cGGACGAAAGugGGGCCGUCugCAc -3' miRNA: 3'- cgucuCUUGCUUUU--UCUGGUAGugGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 65366 | 0.7 | 0.999736 |
Target: 5'- gGCGGGGGGaGAAAGAguuGugCAUCGCCc -3' miRNA: 3'- -CGUCUCUUgCUUUUU---CugGUAGUGGu -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 14545 | 0.7 | 0.999736 |
Target: 5'- aCGGAGGACGGAAucauuACCGcCGCCAa -3' miRNA: 3'- cGUCUCUUGCUUUuuc--UGGUaGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 208662 | 0.7 | 0.999736 |
Target: 5'- aGUAGAagccaGGACGcu---GACCAUCACCGu -3' miRNA: 3'- -CGUCU-----CUUGCuuuuuCUGGUAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 72868 | 0.7 | 0.999736 |
Target: 5'- aGCAccGuGAcGCGAGGAGGGCCGggacUCACCGu -3' miRNA: 3'- -CGU--CuCU-UGCUUUUUCUGGU----AGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 212086 | 0.7 | 0.999736 |
Target: 5'- aCAGAGuGAUGGcuGAGACCAacacgaugucucUCGCCAa -3' miRNA: 3'- cGUCUC-UUGCUuuUUCUGGU------------AGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 13491 | 0.7 | 0.99958 |
Target: 5'- uGCuGAacguGAUGAAAGAGGCCGUCGCgGa -3' miRNA: 3'- -CGuCUc---UUGCUUUUUCUGGUAGUGgU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 7408 | 0.7 | 0.99958 |
Target: 5'- cGCuGAGAugGAAccGAAGucgcuGCCGuUCGCCAg -3' miRNA: 3'- -CGuCUCUugCUU--UUUC-----UGGU-AGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 22697 | 0.7 | 0.999475 |
Target: 5'- -uGGGGAGCGcgcacAAAGGACCGUCaggcGCCGg -3' miRNA: 3'- cgUCUCUUGCu----UUUUCUGGUAG----UGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 205417 | 0.7 | 0.999475 |
Target: 5'- cCGGAGGACGu-GAAGGCUuggaGUCACUAc -3' miRNA: 3'- cGUCUCUUGCuuUUUCUGG----UAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 105177 | 0.71 | 0.999348 |
Target: 5'- cGC-GAGGACGggGAA-ACgGUCGCCGc -3' miRNA: 3'- -CGuCUCUUGCuuUUUcUGgUAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 190380 | 0.71 | 0.999348 |
Target: 5'- cGCGGAGGGagGAGAGGGACgGgaacgaUCACCGc -3' miRNA: 3'- -CGUCUCUUg-CUUUUUCUGgU------AGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 216034 | 0.71 | 0.999196 |
Target: 5'- gGUAGGGAGCcuGGGAGuCCAUCGCUu -3' miRNA: 3'- -CGUCUCUUGcuUUUUCuGGUAGUGGu -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 50312 | 0.71 | 0.999196 |
Target: 5'- gGCcGAGAACuau-GAGACCAcgUCGCCGg -3' miRNA: 3'- -CGuCUCUUGcuuuUUCUGGU--AGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 118958 | 0.71 | 0.999014 |
Target: 5'- cGUAGcGGGCGAGAAagccgcccacguAGACCggCGCCAc -3' miRNA: 3'- -CGUCuCUUGCUUUU------------UCUGGuaGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 167890 | 0.71 | 0.998798 |
Target: 5'- -gGGAGAACau----GACCAUCGCCGc -3' miRNA: 3'- cgUCUCUUGcuuuuuCUGGUAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 82300 | 0.71 | 0.998798 |
Target: 5'- cGCGGcguGGAUGAc-GAGGCCGUCAUCGa -3' miRNA: 3'- -CGUCu--CUUGCUuuUUCUGGUAGUGGU- -5' |
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30227 | 3' | -46 | NC_006273.1 | + | 32283 | 0.71 | 0.998544 |
Target: 5'- -----cGACGAGcgGGACCGUCACCGu -3' miRNA: 3'- cgucucUUGCUUuuUCUGGUAGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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